Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC15.96■□□□□ 0.15
SOX3P41225 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
SOX3P41225 AC005593.1-201ENST00000624894 515 ntBASIC15.96■□□□□ 0.15
SOX3P41225 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SOX3P41225 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
SOX3P41225 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SOX3P41225 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
SOX3P41225 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
SOX3P41225 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.14
SOX3P41225 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC15.96■□□□□ 0.14
SOX3P41225 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
SOX3P41225 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
SOX3P41225 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC15.96■□□□□ 0.14
SOX3P41225 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SOX3P41225 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
SOX3P41225 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
SOX3P41225 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
SOX3P41225 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC15.95■□□□□ 0.14
SOX3P41225 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC15.95■□□□□ 0.14
SOX3P41225 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SOX3P41225 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SOX3P41225 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SOX3P41225 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SOX3P41225 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC15.95■□□□□ 0.14
SOX3P41225 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
SOX3P41225 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SOX3P41225 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SOX3P41225 UNC93B6-202ENST00000528242 690 ntBASIC15.95■□□□□ 0.14
SOX3P41225 AC145285.3-201ENST00000564603 959 ntBASIC15.95■□□□□ 0.14
SOX3P41225 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
SOX3P41225 AL671883.3-201ENST00000603274 991 ntBASIC15.95■□□□□ 0.14
SOX3P41225 PGM5P2-202ENST00000637225 1043 ntBASIC15.95■□□□□ 0.14
SOX3P41225 ZNF259P1-201ENST00000407656 1365 ntBASIC15.95■□□□□ 0.14
SOX3P41225 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC15.95■□□□□ 0.14
SOX3P41225 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SOX3P41225 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SOX3P41225 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC15.95■□□□□ 0.14
SOX3P41225 LINC02199-201ENST00000506655 2702 ntBASIC15.95■□□□□ 0.14
SOX3P41225 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SOX3P41225 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC15.94■□□□□ 0.14
SOX3P41225 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SOX3P41225 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SOX3P41225 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC15.94■□□□□ 0.14
SOX3P41225 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SOX3P41225 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC15.94■□□□□ 0.14
SOX3P41225 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
SOX3P41225 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SOX3P41225 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SOX3P41225 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC15.94■□□□□ 0.14
SOX3P41225 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SOX3P41225 MIR574-201ENST00000385209 96 ntBASIC15.94■□□□□ 0.14
SOX3P41225 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
SOX3P41225 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC15.94■□□□□ 0.14
SOX3P41225 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC15.94■□□□□ 0.14
SOX3P41225 ACTG1P4-201ENST00000425123 1122 ntBASIC15.94■□□□□ 0.14
SOX3P41225 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SOX3P41225 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC15.94■□□□□ 0.14
SOX3P41225 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC15.94■□□□□ 0.14
SOX3P41225 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SOX3P41225 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC15.94■□□□□ 0.14
SOX3P41225 AL353135.1-201ENST00000606729 504 ntBASIC15.94■□□□□ 0.14
SOX3P41225 Z83851.2-201ENST00000609564 659 ntBASIC15.94■□□□□ 0.14
SOX3P41225 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SOX3P41225 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC15.94■□□□□ 0.14
SOX3P41225 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC15.94■□□□□ 0.14
SOX3P41225 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SOX3P41225 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SOX3P41225 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SOX3P41225 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC15.94■□□□□ 0.14
SOX3P41225 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC15.94■□□□□ 0.14
SOX3P41225 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC15.94■□□□□ 0.14
SOX3P41225 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC15.94■□□□□ 0.14
SOX3P41225 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SOX3P41225 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC15.94■□□□□ 0.14
SOX3P41225 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SOX3P41225 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC15.94■□□□□ 0.14
SOX3P41225 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC15.93■□□□□ 0.14
SOX3P41225 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
SOX3P41225 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
SOX3P41225 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
SOX3P41225 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
SOX3P41225 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
SOX3P41225 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC15.93■□□□□ 0.14
SOX3P41225 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC15.93■□□□□ 0.14
SOX3P41225 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC15.93■□□□□ 0.14
SOX3P41225 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC15.93■□□□□ 0.14
SOX3P41225 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC15.93■□□□□ 0.14
SOX3P41225 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
SOX3P41225 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
SOX3P41225 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SOX3P41225 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC15.93■□□□□ 0.14
SOX3P41225 PMS2P1-201ENST00000431037 1228 ntBASIC15.93■□□□□ 0.14
SOX3P41225 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
SOX3P41225 AC034105.1-201ENST00000563488 319 ntBASIC15.93■□□□□ 0.14
SOX3P41225 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC15.93■□□□□ 0.14
SOX3P41225 PIN1-206ENST00000587625 878 ntTSL 2 BASIC15.93■□□□□ 0.14
SOX3P41225 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC15.93■□□□□ 0.14
SOX3P41225 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
SOX3P41225 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
SOX3P41225 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms