Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN4P29074 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN4P29074 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN4P29074 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN4P29074 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN4P29074 PAUPAR-201ENST00000630360 2965 ntBASIC17.04■□□□□ 0.32
PTPN4P29074 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN4P29074 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
PTPN4P29074 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC17.03■□□□□ 0.32
PTPN4P29074 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTPN4P29074 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTPN4P29074 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC17.03■□□□□ 0.32
PTPN4P29074 AC024909.3-201ENST00000611513 2257 ntBASIC17.03■□□□□ 0.32
PTPN4P29074 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTPN4P29074 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTPN4P29074 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTPN4P29074 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.03■□□□□ 0.32
PTPN4P29074 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
PTPN4P29074 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTPN4P29074 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTPN4P29074 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTPN4P29074 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PTPN4P29074 EMD-201ENST00000369835 966 ntTSL 3 BASIC17.03■□□□□ 0.32
PTPN4P29074 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
PTPN4P29074 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTPN4P29074 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC17.03■□□□□ 0.32
PTPN4P29074 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTPN4P29074 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.03■□□□□ 0.32
PTPN4P29074 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC17.03■□□□□ 0.32
PTPN4P29074 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC17.03■□□□□ 0.32
PTPN4P29074 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC17.03■□□□□ 0.32
PTPN4P29074 AC096582.2-201ENST00000510860 516 ntBASIC17.03■□□□□ 0.32
PTPN4P29074 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC17.03■□□□□ 0.32
PTPN4P29074 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC17.03■□□□□ 0.32
PTPN4P29074 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC17.03■□□□□ 0.32
PTPN4P29074 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC17.03■□□□□ 0.32
PTPN4P29074 AC114341.1-201ENST00000618070 349 ntBASIC17.03■□□□□ 0.32
PTPN4P29074 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PTPN4P29074 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTPN4P29074 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTPN4P29074 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTPN4P29074 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTPN4P29074 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC17.02■□□□□ 0.32
PTPN4P29074 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
PTPN4P29074 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PTPN4P29074 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
PTPN4P29074 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
PTPN4P29074 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
PTPN4P29074 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PTPN4P29074 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PTPN4P29074 AC092053.1-201ENST00000605787 1936 ntBASIC17.02■□□□□ 0.32
PTPN4P29074 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PTPN4P29074 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PTPN4P29074 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PTPN4P29074 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PTPN4P29074 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PTPN4P29074 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PTPN4P29074 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
PTPN4P29074 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PTPN4P29074 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC17.02■□□□□ 0.32
PTPN4P29074 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC17.02■□□□□ 0.32
PTPN4P29074 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
PTPN4P29074 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PTPN4P29074 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC17.02■□□□□ 0.32
PTPN4P29074 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
PTPN4P29074 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PTPN4P29074 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PTPN4P29074 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC17.02■□□□□ 0.31
PTPN4P29074 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
PTPN4P29074 MYB-201ENST00000316528 3571 ntTSL 5 BASIC17.02■□□□□ 0.31
PTPN4P29074 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
PTPN4P29074 MYB-241ENST00000616088 3573 ntTSL 5 BASIC17.02■□□□□ 0.31
PTPN4P29074 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.01■□□□□ 0.31
PTPN4P29074 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.01■□□□□ 0.31
PTPN4P29074 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PTPN4P29074 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PTPN4P29074 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PTPN4P29074 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PTPN4P29074 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
PTPN4P29074 HLA-A-201ENST00000376802 1334 ntBASIC17.01■□□□□ 0.31
PTPN4P29074 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PTPN4P29074 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
PTPN4P29074 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
PTPN4P29074 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.01■□□□□ 0.31
PTPN4P29074 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PTPN4P29074 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PTPN4P29074 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PTPN4P29074 CCS-201ENST00000310190 942 ntTSL 5 BASIC17.01■□□□□ 0.31
PTPN4P29074 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
PTPN4P29074 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC17.01■□□□□ 0.31
PTPN4P29074 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PTPN4P29074 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PTPN4P29074 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PTPN4P29074 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PTPN4P29074 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
PTPN4P29074 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC17.01■□□□□ 0.31
PTPN4P29074 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
PTPN4P29074 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PTPN4P29074 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PTPN4P29074 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms