Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC12.93□□□□□ -0.34
HLA-DMBP28068 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC12.93□□□□□ -0.34
HLA-DMBP28068 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC12.93□□□□□ -0.34
HLA-DMBP28068 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DMBP28068 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC12.93□□□□□ -0.34
HLA-DMBP28068 GCK-202ENST00000345378 2421 ntTSL 2 BASIC12.93□□□□□ -0.34
HLA-DMBP28068 FUK-207ENST00000571514 3054 ntTSL 2 BASIC12.93□□□□□ -0.34
HLA-DMBP28068 PMPCAP1-201ENST00000508114 1576 ntBASIC12.93□□□□□ -0.34
HLA-DMBP28068 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DMBP28068 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC12.93□□□□□ -0.34
HLA-DMBP28068 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC12.93□□□□□ -0.34
HLA-DMBP28068 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DMBP28068 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DMBP28068 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DMBP28068 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DMBP28068 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DMBP28068 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC12.93□□□□□ -0.34
HLA-DMBP28068 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC12.93□□□□□ -0.34
HLA-DMBP28068 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
HLA-DMBP28068 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
HLA-DMBP28068 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DMBP28068 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DMBP28068 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DMBP28068 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DMBP28068 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC12.92□□□□□ -0.34
HLA-DMBP28068 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DMBP28068 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DMBP28068 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DMBP28068 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DMBP28068 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC12.92□□□□□ -0.34
HLA-DMBP28068 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DMBP28068 AC006449.5-201ENST00000610658 2098 ntBASIC12.92□□□□□ -0.34
HLA-DMBP28068 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DMBP28068 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
HLA-DMBP28068 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DMBP28068 CCS-201ENST00000310190 942 ntTSL 5 BASIC12.92□□□□□ -0.34
HLA-DMBP28068 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DMBP28068 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DMBP28068 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DMBP28068 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DMBP28068 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC12.92□□□□□ -0.34
HLA-DMBP28068 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DMBP28068 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DMBP28068 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC12.92□□□□□ -0.34
HLA-DMBP28068 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
HLA-DMBP28068 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC12.92□□□□□ -0.34
HLA-DMBP28068 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DMBP28068 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC12.92□□□□□ -0.34
HLA-DMBP28068 IGHV3-47-201ENST00000425060 335 ntBASIC12.92□□□□□ -0.34
HLA-DMBP28068 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
HLA-DMBP28068 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DMBP28068 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
HLA-DMBP28068 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC12.92□□□□□ -0.34
HLA-DMBP28068 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DMBP28068 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC12.92□□□□□ -0.34
HLA-DMBP28068 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC12.92□□□□□ -0.34
HLA-DMBP28068 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC12.92□□□□□ -0.34
HLA-DMBP28068 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
HLA-DMBP28068 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC12.92□□□□□ -0.34
HLA-DMBP28068 AL121772.3-201ENST00000610840 674 ntBASIC12.92□□□□□ -0.34
HLA-DMBP28068 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC12.92□□□□□ -0.34
HLA-DMBP28068 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC12.92□□□□□ -0.34
HLA-DMBP28068 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC12.92□□□□□ -0.34
HLA-DMBP28068 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
HLA-DMBP28068 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DMBP28068 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC12.92□□□□□ -0.34
HLA-DMBP28068 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DMBP28068 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC12.92□□□□□ -0.34
HLA-DMBP28068 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
HLA-DMBP28068 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DMBP28068 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC12.92□□□□□ -0.34
HLA-DMBP28068 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC12.92□□□□□ -0.34
HLA-DMBP28068 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC12.92□□□□□ -0.34
HLA-DMBP28068 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC12.92□□□□□ -0.34
HLA-DMBP28068 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DMBP28068 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DMBP28068 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC12.92□□□□□ -0.34
HLA-DMBP28068 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DMBP28068 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DMBP28068 AL356309.3-201ENST00000624132 1934 ntBASIC12.92□□□□□ -0.34
HLA-DMBP28068 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DMBP28068 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DMBP28068 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DMBP28068 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
HLA-DMBP28068 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DMBP28068 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC12.91□□□□□ -0.34
HLA-DMBP28068 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC12.91□□□□□ -0.34
HLA-DMBP28068 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC12.91□□□□□ -0.34
HLA-DMBP28068 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DMBP28068 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DMBP28068 HLA-A-202ENST00000376806 1854 ntBASIC12.91□□□□□ -0.34
HLA-DMBP28068 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DMBP28068 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
HLA-DMBP28068 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC12.91□□□□□ -0.34
HLA-DMBP28068 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DMBP28068 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DMBP28068 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC12.91□□□□□ -0.34
HLA-DMBP28068 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DMBP28068 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC12.91□□□□□ -0.34
HLA-DMBP28068 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms