Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC17.23■□□□□ 0.35
VCANP13611 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VCANP13611 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VCANP13611 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
VCANP13611 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
VCANP13611 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
VCANP13611 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VCANP13611 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
VCANP13611 AP000974.1-201ENST00000623909 2387 ntBASIC17.23■□□□□ 0.35
VCANP13611 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VCANP13611 HTATIP2-205ENST00000530266 713 ntTSL 3 BASIC17.23■□□□□ 0.35
VCANP13611 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC17.23■□□□□ 0.35
VCANP13611 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
VCANP13611 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC17.23■□□□□ 0.35
VCANP13611 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.23■□□□□ 0.35
VCANP13611 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC17.23■□□□□ 0.35
VCANP13611 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.23■□□□□ 0.35
VCANP13611 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VCANP13611 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
VCANP13611 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VCANP13611 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VCANP13611 TSACC-208ENST00000481479 741 ntTSL 2 BASIC17.23■□□□□ 0.35
VCANP13611 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC17.23■□□□□ 0.35
VCANP13611 DUX4L45-201ENST00000566406 1057 ntBASIC17.23■□□□□ 0.35
VCANP13611 AC148477.9-201ENST00000623974 539 ntBASIC17.23■□□□□ 0.35
VCANP13611 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
VCANP13611 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
VCANP13611 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VCANP13611 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC17.22■□□□□ 0.35
VCANP13611 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VCANP13611 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.22■□□□□ 0.35
VCANP13611 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VCANP13611 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
VCANP13611 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VCANP13611 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VCANP13611 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC17.22■□□□□ 0.35
VCANP13611 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
VCANP13611 AL136301.1-201ENST00000615830 422 ntBASIC17.22■□□□□ 0.35
VCANP13611 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VCANP13611 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VCANP13611 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VCANP13611 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VCANP13611 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC17.22■□□□□ 0.35
VCANP13611 AC135776.1-201ENST00000319817 2481 ntBASIC17.22■□□□□ 0.35
VCANP13611 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
VCANP13611 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC17.22■□□□□ 0.35
VCANP13611 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC17.22■□□□□ 0.35
VCANP13611 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VCANP13611 MIR6756-201ENST00000616240 63 ntBASIC17.22■□□□□ 0.35
VCANP13611 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
VCANP13611 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.22■□□□□ 0.35
VCANP13611 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCANP13611 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCANP13611 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.21■□□□□ 0.35
VCANP13611 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCANP13611 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCANP13611 MSTO2P-201ENST00000314835 1709 ntBASIC17.21■□□□□ 0.35
VCANP13611 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
VCANP13611 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCANP13611 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC17.21■□□□□ 0.35
VCANP13611 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
VCANP13611 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VCANP13611 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
VCANP13611 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC17.21■□□□□ 0.35
VCANP13611 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
VCANP13611 SLC22A20-204ENST00000530038 1673 ntBASIC17.21■□□□□ 0.35
VCANP13611 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCANP13611 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCANP13611 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCANP13611 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
VCANP13611 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCANP13611 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC17.21■□□□□ 0.35
VCANP13611 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.21■□□□□ 0.35
VCANP13611 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCANP13611 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.21■□□□□ 0.35
VCANP13611 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCANP13611 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.21■□□□□ 0.35
VCANP13611 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC17.21■□□□□ 0.35
VCANP13611 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC17.21■□□□□ 0.35
VCANP13611 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC17.21■□□□□ 0.35
VCANP13611 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC17.21■□□□□ 0.35
VCANP13611 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC17.21■□□□□ 0.35
VCANP13611 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VCANP13611 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC17.21■□□□□ 0.35
VCANP13611 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.21■□□□□ 0.35
VCANP13611 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC17.21■□□□□ 0.35
VCANP13611 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCANP13611 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.21■□□□□ 0.34
VCANP13611 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VCANP13611 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC17.2■□□□□ 0.34
VCANP13611 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VCANP13611 AKR7A2P1-201ENST00000460134 915 ntBASIC17.2■□□□□ 0.34
VCANP13611 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC17.2■□□□□ 0.34
VCANP13611 AL022328.1-201ENST00000610050 478 ntBASIC17.2■□□□□ 0.34
VCANP13611 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VCANP13611 AC093010.1-201ENST00000473625 1624 ntBASIC17.2■□□□□ 0.34
VCANP13611 AC073439.1-201ENST00000624121 1774 ntBASIC17.2■□□□□ 0.34
VCANP13611 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.2■□□□□ 0.34
VCANP13611 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC17.2■□□□□ 0.34
VCANP13611 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms