Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 AL512652.2-201ENST00000625156 1716 ntBASIC20.38■□□□□ 0.85
COL4A1P02462 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC20.38■□□□□ 0.85
COL4A1P02462 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
COL4A1P02462 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC20.38■□□□□ 0.85
COL4A1P02462 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL4A1P02462 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
COL4A1P02462 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL4A1P02462 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL4A1P02462 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL4A1P02462 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC20.38■□□□□ 0.85
COL4A1P02462 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL4A1P02462 NAA50-208ENST00000497255 789 ntTSL 5 BASIC20.38■□□□□ 0.85
COL4A1P02462 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL4A1P02462 STOM-203ENST00000538954 1257 ntTSL 5 BASIC20.38■□□□□ 0.85
COL4A1P02462 AC104794.3-201ENST00000566840 1248 ntBASIC20.38■□□□□ 0.85
COL4A1P02462 COX11-202ENST00000571584 1108 ntTSL 2 BASIC20.38■□□□□ 0.85
COL4A1P02462 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC20.38■□□□□ 0.85
COL4A1P02462 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC20.38■□□□□ 0.85
COL4A1P02462 AL662799.1-202ENST00000614205 422 ntBASIC20.38■□□□□ 0.85
COL4A1P02462 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
COL4A1P02462 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A1P02462 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A1P02462 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A1P02462 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A1P02462 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A1P02462 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC20.37■□□□□ 0.85
COL4A1P02462 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A1P02462 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A1P02462 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A1P02462 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A1P02462 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A1P02462 MTND6P24-201ENST00000440466 518 ntBASIC20.37■□□□□ 0.85
COL4A1P02462 AC093724.1-201ENST00000448659 1027 ntBASIC20.37■□□□□ 0.85
COL4A1P02462 RNA5SP410-201ENST00000516285 106 ntBASIC20.37■□□□□ 0.85
COL4A1P02462 RN7SL828P-201ENST00000607615 303 ntBASIC20.37■□□□□ 0.85
COL4A1P02462 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
COL4A1P02462 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A1P02462 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A1P02462 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
COL4A1P02462 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A1P02462 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
COL4A1P02462 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
COL4A1P02462 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC20.37■□□□□ 0.85
COL4A1P02462 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A1P02462 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC20.37■□□□□ 0.85
COL4A1P02462 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.36■□□□□ 0.85
COL4A1P02462 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC20.36■□□□□ 0.85
COL4A1P02462 KRT8P39-201ENST00000396270 1433 ntBASIC20.36■□□□□ 0.85
COL4A1P02462 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A1P02462 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A1P02462 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A1P02462 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
COL4A1P02462 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC20.36■□□□□ 0.85
COL4A1P02462 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC20.36■□□□□ 0.85
COL4A1P02462 CENPM-206ENST00000407253 818 ntTSL 2 BASIC20.36■□□□□ 0.85
COL4A1P02462 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC20.36■□□□□ 0.85
COL4A1P02462 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
COL4A1P02462 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC20.36■□□□□ 0.85
COL4A1P02462 AL596325.1-201ENST00000563991 1082 ntBASIC20.36■□□□□ 0.85
COL4A1P02462 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC20.36■□□□□ 0.85
COL4A1P02462 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A1P02462 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC20.36■□□□□ 0.85
COL4A1P02462 RNA5-8SN1-201ENST00000610460 153 ntBASIC20.36■□□□□ 0.85
COL4A1P02462 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A1P02462 RNA5-8SN5-202ENST00000612463 153 ntBASIC20.36■□□□□ 0.85
COL4A1P02462 RNA5-8SN4-201ENST00000613359 153 ntBASIC20.36■□□□□ 0.85
COL4A1P02462 SPTSSB-204ENST00000617024 1292 ntBASIC20.36■□□□□ 0.85
COL4A1P02462 RNA5-8SN5-201ENST00000619471 153 ntBASIC20.36■□□□□ 0.85
COL4A1P02462 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A1P02462 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A1P02462 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A1P02462 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
COL4A1P02462 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A1P02462 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC20.36■□□□□ 0.85
COL4A1P02462 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
COL4A1P02462 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A1P02462 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC20.35■□□□□ 0.85
COL4A1P02462 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC20.35■□□□□ 0.85
COL4A1P02462 LITAF-210ENST00000571976 548 ntTSL 2 BASIC20.35■□□□□ 0.85
COL4A1P02462 LITAF-214ENST00000574703 486 ntTSL 2 BASIC20.35■□□□□ 0.85
COL4A1P02462 FHL2-212ENST00000607522 759 ntTSL 2 BASIC20.35■□□□□ 0.85
COL4A1P02462 AC009118.2-201ENST00000613275 655 ntBASIC20.35■□□□□ 0.85
COL4A1P02462 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC20.35■□□□□ 0.85
COL4A1P02462 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A1P02462 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC20.35■□□□□ 0.85
COL4A1P02462 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC20.35■□□□□ 0.85
COL4A1P02462 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A1P02462 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A1P02462 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A1P02462 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A1P02462 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A1P02462 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A1P02462 AL031731.1-201ENST00000642131 2094 ntBASIC20.35■□□□□ 0.85
COL4A1P02462 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
COL4A1P02462 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC20.35■□□□□ 0.85
COL4A1P02462 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A1P02462 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
COL4A1P02462 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A1P02462 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A1P02462 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms