Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC16.02■□□□□ 0.16
CLPTM1O96005 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC16.02■□□□□ 0.16
CLPTM1O96005 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
CLPTM1O96005 AC140113.3-201ENST00000605663 199 ntBASIC16.02■□□□□ 0.16
CLPTM1O96005 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC16.02■□□□□ 0.16
CLPTM1O96005 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
CLPTM1O96005 AC011558.1-201ENST00000623459 338 ntBASIC16.02■□□□□ 0.16
CLPTM1O96005 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CLPTM1O96005 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CLPTM1O96005 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
CLPTM1O96005 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CLPTM1O96005 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CLPTM1O96005 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
CLPTM1O96005 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CLPTM1O96005 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CLPTM1O96005 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CLPTM1O96005 HLA-DQB2-231ENST00000435145 2026 ntBASIC16.02■□□□□ 0.15
CLPTM1O96005 BLK-205ENST00000529894 2017 ntTSL 5 BASIC16.02■□□□□ 0.15
CLPTM1O96005 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC16.02■□□□□ 0.15
CLPTM1O96005 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
CLPTM1O96005 AC022532.1-201ENST00000624563 1728 ntBASIC16.02■□□□□ 0.15
CLPTM1O96005 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC16.02■□□□□ 0.15
CLPTM1O96005 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CLPTM1O96005 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
CLPTM1O96005 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.02■□□□□ 0.15
CLPTM1O96005 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC16.02■□□□□ 0.15
CLPTM1O96005 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
CLPTM1O96005 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLPTM1O96005 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLPTM1O96005 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
CLPTM1O96005 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CLPTM1O96005 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC16.01■□□□□ 0.15
CLPTM1O96005 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLPTM1O96005 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLPTM1O96005 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLPTM1O96005 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLPTM1O96005 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLPTM1O96005 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC16.01■□□□□ 0.15
CLPTM1O96005 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLPTM1O96005 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLPTM1O96005 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLPTM1O96005 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CLPTM1O96005 ANKRD20A18P-201ENST00000359341 492 ntBASIC16.01■□□□□ 0.15
CLPTM1O96005 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CLPTM1O96005 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CLPTM1O96005 MIR1224-201ENST00000408193 85 ntBASIC16.01■□□□□ 0.15
CLPTM1O96005 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC16.01■□□□□ 0.15
CLPTM1O96005 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC16.01■□□□□ 0.15
CLPTM1O96005 DDX43P3-201ENST00000441064 443 ntBASIC16.01■□□□□ 0.15
CLPTM1O96005 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CLPTM1O96005 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CLPTM1O96005 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLPTM1O96005 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLPTM1O96005 DUX4L26-201ENST00000489078 1255 ntBASIC16.01■□□□□ 0.15
CLPTM1O96005 AL049597.2-201ENST00000565575 961 ntBASIC16.01■□□□□ 0.15
CLPTM1O96005 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC16.01■□□□□ 0.15
CLPTM1O96005 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC16.01■□□□□ 0.15
CLPTM1O96005 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CLPTM1O96005 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC16.01■□□□□ 0.15
CLPTM1O96005 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
CLPTM1O96005 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.01■□□□□ 0.15
CLPTM1O96005 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CLPTM1O96005 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.01■□□□□ 0.15
CLPTM1O96005 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLPTM1O96005 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLPTM1O96005 AC073347.1-201ENST00000421633 2643 ntBASIC16.01■□□□□ 0.15
CLPTM1O96005 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLPTM1O96005 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CLPTM1O96005 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLPTM1O96005 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLPTM1O96005 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
CLPTM1O96005 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC16.01■□□□□ 0.15
CLPTM1O96005 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.01■□□□□ 0.15
CLPTM1O96005 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
CLPTM1O96005 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLPTM1O96005 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLPTM1O96005 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLPTM1O96005 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLPTM1O96005 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
CLPTM1O96005 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC16■□□□□ 0.15
CLPTM1O96005 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC16■□□□□ 0.15
CLPTM1O96005 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC16■□□□□ 0.15
CLPTM1O96005 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC16■□□□□ 0.15
CLPTM1O96005 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
CLPTM1O96005 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CLPTM1O96005 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CLPTM1O96005 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC16■□□□□ 0.15
CLPTM1O96005 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16■□□□□ 0.15
CLPTM1O96005 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CLPTM1O96005 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CLPTM1O96005 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16■□□□□ 0.15
CLPTM1O96005 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC16■□□□□ 0.15
CLPTM1O96005 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CLPTM1O96005 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC16■□□□□ 0.15
CLPTM1O96005 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CLPTM1O96005 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
CLPTM1O96005 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CLPTM1O96005 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CLPTM1O96005 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC16■□□□□ 0.15
CLPTM1O96005 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms