Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TOP3BO95985 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TOP3BO95985 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
TOP3BO95985 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TOP3BO95985 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
TOP3BO95985 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TOP3BO95985 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
TOP3BO95985 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
TOP3BO95985 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TOP3BO95985 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.34■□□□□ 0.37
TOP3BO95985 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TOP3BO95985 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TOP3BO95985 PTMS-202ENST00000389462 773 ntTSL 2 BASIC17.34■□□□□ 0.37
TOP3BO95985 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
TOP3BO95985 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.34■□□□□ 0.37
TOP3BO95985 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TOP3BO95985 AC096633.1-201ENST00000422446 749 ntBASIC17.34■□□□□ 0.37
TOP3BO95985 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
TOP3BO95985 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TOP3BO95985 BCRP1-201ENST00000444246 691 ntBASIC17.34■□□□□ 0.37
TOP3BO95985 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TOP3BO95985 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC17.34■□□□□ 0.37
TOP3BO95985 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TOP3BO95985 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC17.34■□□□□ 0.37
TOP3BO95985 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
TOP3BO95985 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TOP3BO95985 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
TOP3BO95985 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
TOP3BO95985 CYGB-205ENST00000590175 830 ntTSL 3 BASIC17.34■□□□□ 0.37
TOP3BO95985 AL138831.2-201ENST00000606564 490 ntBASIC17.34■□□□□ 0.37
TOP3BO95985 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TOP3BO95985 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC17.34■□□□□ 0.37
TOP3BO95985 MIR1199-201ENST00000621445 119 ntBASIC17.34■□□□□ 0.37
TOP3BO95985 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC17.34■□□□□ 0.37
TOP3BO95985 AC078925.2-201ENST00000624013 1973 ntBASIC17.34■□□□□ 0.37
TOP3BO95985 AC093525.9-201ENST00000624961 1746 ntBASIC17.34■□□□□ 0.37
TOP3BO95985 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
TOP3BO95985 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
TOP3BO95985 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.34■□□□□ 0.37
TOP3BO95985 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC17.34■□□□□ 0.37
TOP3BO95985 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TOP3BO95985 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TOP3BO95985 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
TOP3BO95985 WT1-209ENST00000530998 2421 ntTSL 2 BASIC17.33■□□□□ 0.37
TOP3BO95985 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.33■□□□□ 0.37
TOP3BO95985 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TOP3BO95985 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TOP3BO95985 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TOP3BO95985 OR6D1P-202ENST00000641007 5290 ntBASIC17.33■□□□□ 0.37
TOP3BO95985 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
TOP3BO95985 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TOP3BO95985 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TOP3BO95985 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
TOP3BO95985 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TOP3BO95985 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC17.33■□□□□ 0.36
TOP3BO95985 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC17.33■□□□□ 0.36
TOP3BO95985 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
TOP3BO95985 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TOP3BO95985 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC17.33■□□□□ 0.36
TOP3BO95985 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC17.33■□□□□ 0.36
TOP3BO95985 AC097374.2-201ENST00000618617 1306 ntBASIC17.33■□□□□ 0.36
TOP3BO95985 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TOP3BO95985 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
TOP3BO95985 CD82-202ENST00000342935 967 ntTSL 5 BASIC17.33■□□□□ 0.36
TOP3BO95985 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
TOP3BO95985 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TOP3BO95985 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC17.33■□□□□ 0.36
TOP3BO95985 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC17.33■□□□□ 0.36
TOP3BO95985 RNF151-202ENST00000569210 853 ntTSL 2 BASIC17.33■□□□□ 0.36
TOP3BO95985 AC093028.1-201ENST00000622998 982 ntBASIC17.33■□□□□ 0.36
TOP3BO95985 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC17.33■□□□□ 0.36
TOP3BO95985 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
TOP3BO95985 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
TOP3BO95985 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TOP3BO95985 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TOP3BO95985 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TOP3BO95985 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC17.33■□□□□ 0.36
TOP3BO95985 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
TOP3BO95985 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TOP3BO95985 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TOP3BO95985 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.36
TOP3BO95985 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
TOP3BO95985 OS9-205ENST00000413095 1660 ntTSL 2 BASIC17.32■□□□□ 0.36
TOP3BO95985 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.32■□□□□ 0.36
TOP3BO95985 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.32■□□□□ 0.36
TOP3BO95985 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TOP3BO95985 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC17.32■□□□□ 0.36
TOP3BO95985 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.32■□□□□ 0.36
TOP3BO95985 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
TOP3BO95985 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.32■□□□□ 0.36
TOP3BO95985 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TOP3BO95985 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
TOP3BO95985 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TOP3BO95985 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC17.32■□□□□ 0.36
TOP3BO95985 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TOP3BO95985 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
TOP3BO95985 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TOP3BO95985 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
TOP3BO95985 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC17.32■□□□□ 0.36
TOP3BO95985 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms