Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC19.52■□□□□ 0.72
CTDNEP1O95476 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
CTDNEP1O95476 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CTDNEP1O95476 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CTDNEP1O95476 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC19.52■□□□□ 0.72
CTDNEP1O95476 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC19.52■□□□□ 0.72
CTDNEP1O95476 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC19.52■□□□□ 0.72
CTDNEP1O95476 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC19.52■□□□□ 0.72
CTDNEP1O95476 IGHV3-22-201ENST00000520721 359 ntBASIC19.52■□□□□ 0.72
CTDNEP1O95476 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC19.52■□□□□ 0.72
CTDNEP1O95476 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC19.52■□□□□ 0.72
CTDNEP1O95476 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC19.52■□□□□ 0.72
CTDNEP1O95476 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
CTDNEP1O95476 SIGLEC29P-201ENST00000599873 1114 ntBASIC19.52■□□□□ 0.72
CTDNEP1O95476 PGM5P2-202ENST00000637225 1043 ntBASIC19.52■□□□□ 0.72
CTDNEP1O95476 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CTDNEP1O95476 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC19.52■□□□□ 0.72
CTDNEP1O95476 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.71
CTDNEP1O95476 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CTDNEP1O95476 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC19.52■□□□□ 0.71
CTDNEP1O95476 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC19.52■□□□□ 0.71
CTDNEP1O95476 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
CTDNEP1O95476 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CTDNEP1O95476 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
CTDNEP1O95476 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC19.52■□□□□ 0.71
CTDNEP1O95476 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CTDNEP1O95476 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
CTDNEP1O95476 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
CTDNEP1O95476 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC19.52■□□□□ 0.71
CTDNEP1O95476 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CTDNEP1O95476 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CTDNEP1O95476 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC19.51■□□□□ 0.71
CTDNEP1O95476 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC19.51■□□□□ 0.71
CTDNEP1O95476 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CTDNEP1O95476 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CTDNEP1O95476 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC19.51■□□□□ 0.71
CTDNEP1O95476 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CTDNEP1O95476 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CTDNEP1O95476 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CTDNEP1O95476 RPS2P28-201ENST00000314255 741 ntBASIC19.51■□□□□ 0.71
CTDNEP1O95476 MRPL20P1-201ENST00000400819 433 ntBASIC19.51■□□□□ 0.71
CTDNEP1O95476 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC19.51■□□□□ 0.71
CTDNEP1O95476 AC009947.1-201ENST00000444350 727 ntBASIC19.51■□□□□ 0.71
CTDNEP1O95476 UNC93B6-202ENST00000528242 690 ntBASIC19.51■□□□□ 0.71
CTDNEP1O95476 POLD4-207ENST00000531239 584 ntTSL 2 BASIC19.51■□□□□ 0.71
CTDNEP1O95476 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC19.51■□□□□ 0.71
CTDNEP1O95476 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CTDNEP1O95476 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CTDNEP1O95476 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CTDNEP1O95476 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CTDNEP1O95476 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
CTDNEP1O95476 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC19.51■□□□□ 0.71
CTDNEP1O95476 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC19.51■□□□□ 0.71
CTDNEP1O95476 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CTDNEP1O95476 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
CTDNEP1O95476 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC19.51■□□□□ 0.71
CTDNEP1O95476 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
CTDNEP1O95476 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
CTDNEP1O95476 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CTDNEP1O95476 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
CTDNEP1O95476 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CTDNEP1O95476 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CTDNEP1O95476 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CTDNEP1O95476 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
CTDNEP1O95476 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
CTDNEP1O95476 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC19.5■□□□□ 0.71
CTDNEP1O95476 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CTDNEP1O95476 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CTDNEP1O95476 IGLL3P-201ENST00000412472 434 ntBASIC19.5■□□□□ 0.71
CTDNEP1O95476 FAM185BP-201ENST00000443595 716 ntBASIC19.5■□□□□ 0.71
CTDNEP1O95476 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
CTDNEP1O95476 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC19.5■□□□□ 0.71
CTDNEP1O95476 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
CTDNEP1O95476 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CTDNEP1O95476 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC19.5■□□□□ 0.71
CTDNEP1O95476 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
CTDNEP1O95476 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC19.5■□□□□ 0.71
CTDNEP1O95476 LITAF-211ENST00000572255 516 ntTSL 4 BASIC19.5■□□□□ 0.71
CTDNEP1O95476 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
CTDNEP1O95476 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC19.5■□□□□ 0.71
CTDNEP1O95476 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CTDNEP1O95476 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
CTDNEP1O95476 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CTDNEP1O95476 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CTDNEP1O95476 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
CTDNEP1O95476 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CTDNEP1O95476 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC19.5■□□□□ 0.71
CTDNEP1O95476 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC19.5■□□□□ 0.71
CTDNEP1O95476 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CTDNEP1O95476 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CTDNEP1O95476 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC19.49■□□□□ 0.71
CTDNEP1O95476 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC19.49■□□□□ 0.71
CTDNEP1O95476 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC19.49■□□□□ 0.71
CTDNEP1O95476 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CTDNEP1O95476 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.49■□□□□ 0.71
CTDNEP1O95476 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC19.49■□□□□ 0.71
CTDNEP1O95476 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC19.49■□□□□ 0.71
CTDNEP1O95476 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CTDNEP1O95476 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CTDNEP1O95476 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms