Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDB3O75112 AC064836.3-201ENST00000607928 673 ntBASIC15.9■□□□□ 0.14
LDB3O75112 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC15.9■□□□□ 0.14
LDB3O75112 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDB3O75112 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC15.9■□□□□ 0.14
LDB3O75112 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC15.9■□□□□ 0.14
LDB3O75112 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDB3O75112 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC15.9■□□□□ 0.14
LDB3O75112 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC15.9■□□□□ 0.14
LDB3O75112 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDB3O75112 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDB3O75112 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
LDB3O75112 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
LDB3O75112 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC15.9■□□□□ 0.14
LDB3O75112 AC011676.5-201ENST00000624864 2660 ntBASIC15.9■□□□□ 0.14
LDB3O75112 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LDB3O75112 NKILA-202ENST00000614771 2598 ntBASIC15.89■□□□□ 0.13
LDB3O75112 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
LDB3O75112 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LDB3O75112 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC15.89■□□□□ 0.13
LDB3O75112 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LDB3O75112 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDB3O75112 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LDB3O75112 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDB3O75112 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDB3O75112 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC15.89■□□□□ 0.13
LDB3O75112 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC15.89■□□□□ 0.13
LDB3O75112 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDB3O75112 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LDB3O75112 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC15.89■□□□□ 0.13
LDB3O75112 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
LDB3O75112 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC15.89■□□□□ 0.13
LDB3O75112 MIR940-201ENST00000401276 94 ntBASIC15.89■□□□□ 0.13
LDB3O75112 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
LDB3O75112 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
LDB3O75112 CXCL1P1-201ENST00000502804 216 ntBASIC15.89■□□□□ 0.13
LDB3O75112 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC15.89■□□□□ 0.13
LDB3O75112 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
LDB3O75112 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC15.89■□□□□ 0.13
LDB3O75112 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC15.89■□□□□ 0.13
LDB3O75112 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC15.89■□□□□ 0.13
LDB3O75112 AC140113.2-201ENST00000604370 208 ntBASIC15.89■□□□□ 0.13
LDB3O75112 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDB3O75112 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDB3O75112 CA12-203ENST00000422263 2556 ntTSL 2 BASIC15.89■□□□□ 0.13
LDB3O75112 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LDB3O75112 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDB3O75112 HARS-204ENST00000438307 1789 ntTSL 2 BASIC15.89■□□□□ 0.13
LDB3O75112 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDB3O75112 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC15.89■□□□□ 0.13
LDB3O75112 CROCCP1-201ENST00000426910 5675 ntBASIC15.89■□□□□ 0.13
LDB3O75112 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDB3O75112 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDB3O75112 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC15.89■□□□□ 0.13
LDB3O75112 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LDB3O75112 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDB3O75112 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDB3O75112 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LDB3O75112 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC15.89■□□□□ 0.13
LDB3O75112 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
LDB3O75112 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDB3O75112 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
LDB3O75112 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC15.88■□□□□ 0.13
LDB3O75112 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
LDB3O75112 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
LDB3O75112 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LDB3O75112 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LDB3O75112 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
LDB3O75112 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC15.88■□□□□ 0.13
LDB3O75112 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
LDB3O75112 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
LDB3O75112 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LDB3O75112 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC15.88■□□□□ 0.13
LDB3O75112 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LDB3O75112 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
LDB3O75112 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC15.88■□□□□ 0.13
LDB3O75112 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC15.88■□□□□ 0.13
LDB3O75112 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
LDB3O75112 MED15P5-201ENST00000423150 992 ntBASIC15.88■□□□□ 0.13
LDB3O75112 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC15.88■□□□□ 0.13
LDB3O75112 KRT18P2-201ENST00000447938 1258 ntBASIC15.88■□□□□ 0.13
LDB3O75112 HS6ST1P1-201ENST00000481504 1234 ntBASIC15.88■□□□□ 0.13
LDB3O75112 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
LDB3O75112 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC15.88■□□□□ 0.13
LDB3O75112 CAND2-206ENST00000626378 333 ntTSL 5 BASIC15.88■□□□□ 0.13
LDB3O75112 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
LDB3O75112 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LDB3O75112 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LDB3O75112 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
LDB3O75112 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC15.88■□□□□ 0.13
LDB3O75112 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC15.88■□□□□ 0.13
LDB3O75112 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC15.88■□□□□ 0.13
LDB3O75112 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
LDB3O75112 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LDB3O75112 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC15.88■□□□□ 0.13
LDB3O75112 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LDB3O75112 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
LDB3O75112 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
LDB3O75112 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC15.88■□□□□ 0.13
LDB3O75112 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms