Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 TREML5P-201ENST00000421694 576 ntBASIC16.48■□□□□ 0.23
SDC3O75056 SLC25A6P5-201ENST00000435663 894 ntBASIC16.48■□□□□ 0.23
SDC3O75056 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.48■□□□□ 0.23
SDC3O75056 IGHV3-42-201ENST00000520410 361 ntBASIC16.48■□□□□ 0.23
SDC3O75056 LINC01225-203ENST00000563550 1244 ntBASIC16.48■□□□□ 0.23
SDC3O75056 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC16.48■□□□□ 0.23
SDC3O75056 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC16.48■□□□□ 0.23
SDC3O75056 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDC3O75056 MIR6080-201ENST00000617359 66 ntBASIC16.48■□□□□ 0.23
SDC3O75056 AJ011932.1-201ENST00000621707 465 ntBASIC16.48■□□□□ 0.23
SDC3O75056 RAB34-224ENST00000636513 888 ntTSL 5 BASIC16.48■□□□□ 0.23
SDC3O75056 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDC3O75056 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SDC3O75056 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SDC3O75056 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDC3O75056 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
SDC3O75056 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.48■□□□□ 0.23
SDC3O75056 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC16.48■□□□□ 0.23
SDC3O75056 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDC3O75056 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDC3O75056 FO538757.1-201ENST00000623083 1397 ntBASIC16.48■□□□□ 0.23
SDC3O75056 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDC3O75056 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDC3O75056 FST-202ENST00000396947 2538 ntTSL 5 BASIC16.48■□□□□ 0.23
SDC3O75056 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.48■□□□□ 0.23
SDC3O75056 AC093525.9-201ENST00000624961 1746 ntBASIC16.48■□□□□ 0.23
SDC3O75056 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDC3O75056 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SDC3O75056 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SDC3O75056 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.47■□□□□ 0.23
SDC3O75056 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SDC3O75056 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SDC3O75056 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SDC3O75056 WASH6P-202ENST00000359512 1437 ntBASIC16.47■□□□□ 0.23
SDC3O75056 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SDC3O75056 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SDC3O75056 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.47■□□□□ 0.23
SDC3O75056 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
SDC3O75056 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
SDC3O75056 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SDC3O75056 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC16.47■□□□□ 0.23
SDC3O75056 RNU1-129P-201ENST00000384064 167 ntBASIC16.47■□□□□ 0.23
SDC3O75056 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
SDC3O75056 HCG4-201ENST00000418983 998 ntBASIC16.47■□□□□ 0.23
SDC3O75056 BASP1P1-201ENST00000430708 665 ntBASIC16.47■□□□□ 0.23
SDC3O75056 SPDYE14P-201ENST00000442619 822 ntBASIC16.47■□□□□ 0.23
SDC3O75056 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC16.47■□□□□ 0.23
SDC3O75056 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC16.47■□□□□ 0.23
SDC3O75056 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC16.47■□□□□ 0.23
SDC3O75056 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC16.47■□□□□ 0.23
SDC3O75056 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
SDC3O75056 AC109635.5-201ENST00000533593 962 ntBASIC16.47■□□□□ 0.23
SDC3O75056 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC16.47■□□□□ 0.23
SDC3O75056 AL512356.2-201ENST00000546955 174 ntBASIC16.47■□□□□ 0.23
SDC3O75056 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC16.47■□□□□ 0.23
SDC3O75056 NAA60-208ENST00000570819 833 ntTSL 2 BASIC16.47■□□□□ 0.23
SDC3O75056 U1.21-201ENST00000580816 167 ntBASIC16.47■□□□□ 0.23
SDC3O75056 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC16.47■□□□□ 0.23
SDC3O75056 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC16.47■□□□□ 0.23
SDC3O75056 AL390754.1-201ENST00000619088 582 ntBASIC16.47■□□□□ 0.23
SDC3O75056 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
SDC3O75056 GNAS-203ENST00000306120 1878 ntBASIC16.47■□□□□ 0.23
SDC3O75056 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.47■□□□□ 0.23
SDC3O75056 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SDC3O75056 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
SDC3O75056 TOP3BP1-201ENST00000420768 1380 ntBASIC16.47■□□□□ 0.23
SDC3O75056 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC16.47■□□□□ 0.23
SDC3O75056 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SDC3O75056 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC16.47■□□□□ 0.23
SDC3O75056 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC16.47■□□□□ 0.23
SDC3O75056 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC16.47■□□□□ 0.23
SDC3O75056 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
SDC3O75056 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SDC3O75056 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SDC3O75056 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
SDC3O75056 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.46■□□□□ 0.23
SDC3O75056 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC16.46■□□□□ 0.23
SDC3O75056 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.46■□□□□ 0.23
SDC3O75056 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
SDC3O75056 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SDC3O75056 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SDC3O75056 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
SDC3O75056 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SDC3O75056 BAD-202ENST00000394531 631 ntTSL 3 BASIC16.46■□□□□ 0.23
SDC3O75056 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC16.46■□□□□ 0.23
SDC3O75056 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC16.46■□□□□ 0.23
SDC3O75056 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
SDC3O75056 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC16.46■□□□□ 0.23
SDC3O75056 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.46■□□□□ 0.23
SDC3O75056 BAD-207ENST00000544785 525 ntTSL 3 BASIC16.46■□□□□ 0.23
SDC3O75056 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC16.46■□□□□ 0.23
SDC3O75056 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SDC3O75056 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SDC3O75056 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SDC3O75056 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SDC3O75056 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SDC3O75056 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
SDC3O75056 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SDC3O75056 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC16.46■□□□□ 0.23
SDC3O75056 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms