Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC13.66□□□□□ -0.22
HMGB3O15347 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
HMGB3O15347 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HMGB3O15347 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC13.66□□□□□ -0.22
HMGB3O15347 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HMGB3O15347 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HMGB3O15347 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HMGB3O15347 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
HMGB3O15347 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HMGB3O15347 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HMGB3O15347 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC13.66□□□□□ -0.22
HMGB3O15347 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HMGB3O15347 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HMGB3O15347 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC13.66□□□□□ -0.22
HMGB3O15347 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
HMGB3O15347 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
HMGB3O15347 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
HMGB3O15347 RGS12-204ENST00000382788 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
HMGB3O15347 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HMGB3O15347 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HMGB3O15347 INSRR-201ENST00000368195 5101 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HMGB3O15347 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
HMGB3O15347 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC13.66□□□□□ -0.22
HMGB3O15347 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HMGB3O15347 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
HMGB3O15347 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HMGB3O15347 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC13.65□□□□□ -0.22
HMGB3O15347 SRI-203ENST00000419179 1307 ntTSL 2 BASIC13.65□□□□□ -0.22
HMGB3O15347 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HMGB3O15347 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HMGB3O15347 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HMGB3O15347 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
HMGB3O15347 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
HMGB3O15347 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HMGB3O15347 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.22
HMGB3O15347 BX276092.7-203ENST00000637198 1536 ntBASIC13.65□□□□□ -0.22
HMGB3O15347 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC13.65□□□□□ -0.22
HMGB3O15347 SNX33-201ENST00000308527 8008 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HMGB3O15347 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
HMGB3O15347 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HMGB3O15347 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
HMGB3O15347 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HMGB3O15347 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
HMGB3O15347 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HMGB3O15347 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HMGB3O15347 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HMGB3O15347 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC13.65□□□□□ -0.22
HMGB3O15347 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HMGB3O15347 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
HMGB3O15347 SUGP2-203ENST00000452918 6176 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
HMGB3O15347 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HMGB3O15347 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC13.65□□□□□ -0.22
HMGB3O15347 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC13.65□□□□□ -0.22
HMGB3O15347 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC13.65□□□□□ -0.22
HMGB3O15347 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC13.65□□□□□ -0.22
HMGB3O15347 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
HMGB3O15347 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC13.65□□□□□ -0.22
HMGB3O15347 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC13.65□□□□□ -0.22
HMGB3O15347 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC13.65□□□□□ -0.22
HMGB3O15347 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
HMGB3O15347 AC008687.5-201ENST00000593746 558 ntBASIC13.65□□□□□ -0.22
HMGB3O15347 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC13.65□□□□□ -0.22
HMGB3O15347 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
HMGB3O15347 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HMGB3O15347 OR1I1-202ENST00000641398 5984 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
HMGB3O15347 AC022188.1-201ENST00000620960 1664 ntBASIC13.65□□□□□ -0.22
HMGB3O15347 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC13.65□□□□□ -0.22
HMGB3O15347 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
HMGB3O15347 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HMGB3O15347 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC13.65□□□□□ -0.22
HMGB3O15347 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
HMGB3O15347 AC144831.1-201ENST00000573312 2656 ntBASIC13.65□□□□□ -0.22
HMGB3O15347 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC13.65□□□□□ -0.22
HMGB3O15347 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC13.64□□□□□ -0.23
HMGB3O15347 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HMGB3O15347 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HMGB3O15347 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HMGB3O15347 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC13.64□□□□□ -0.23
HMGB3O15347 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
HMGB3O15347 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
HMGB3O15347 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC13.64□□□□□ -0.23
HMGB3O15347 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HMGB3O15347 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HMGB3O15347 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HMGB3O15347 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HMGB3O15347 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC13.64□□□□□ -0.23
HMGB3O15347 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HMGB3O15347 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HMGB3O15347 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
HMGB3O15347 MAD2L1-201ENST00000296509 5468 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HMGB3O15347 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HMGB3O15347 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
HMGB3O15347 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC13.64□□□□□ -0.23
HMGB3O15347 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC13.64□□□□□ -0.23
HMGB3O15347 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC13.64□□□□□ -0.23
HMGB3O15347 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HMGB3O15347 AR-208ENST00000612452 10676 ntTSL 5 BASIC13.64□□□□□ -0.23
HMGB3O15347 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
HMGB3O15347 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HMGB3O15347 RAB6B-201ENST00000285208 5526 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms