Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC16.04■□□□□ 0.16
UPK1AO00322 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
UPK1AO00322 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
UPK1AO00322 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.04■□□□□ 0.16
UPK1AO00322 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.04■□□□□ 0.16
UPK1AO00322 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
UPK1AO00322 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC16.04■□□□□ 0.16
UPK1AO00322 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
UPK1AO00322 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
UPK1AO00322 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
UPK1AO00322 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
UPK1AO00322 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
UPK1AO00322 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC16.03■□□□□ 0.16
UPK1AO00322 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.03■□□□□ 0.16
UPK1AO00322 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.03■□□□□ 0.16
UPK1AO00322 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
UPK1AO00322 NCF1C-201ENST00000438382 1427 ntBASIC16.03■□□□□ 0.16
UPK1AO00322 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
UPK1AO00322 PAUPAR-201ENST00000630360 2965 ntBASIC16.03■□□□□ 0.16
UPK1AO00322 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
UPK1AO00322 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
UPK1AO00322 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
UPK1AO00322 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
UPK1AO00322 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
UPK1AO00322 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.03■□□□□ 0.16
UPK1AO00322 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.03■□□□□ 0.16
UPK1AO00322 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
UPK1AO00322 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
UPK1AO00322 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
UPK1AO00322 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.03■□□□□ 0.16
UPK1AO00322 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.03■□□□□ 0.16
UPK1AO00322 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.03■□□□□ 0.16
UPK1AO00322 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
UPK1AO00322 AL353135.1-201ENST00000606729 504 ntBASIC16.03■□□□□ 0.16
UPK1AO00322 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.03■□□□□ 0.16
UPK1AO00322 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
UPK1AO00322 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
UPK1AO00322 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.03■□□□□ 0.16
UPK1AO00322 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
UPK1AO00322 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
UPK1AO00322 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC16.03■□□□□ 0.16
UPK1AO00322 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
UPK1AO00322 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
UPK1AO00322 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
UPK1AO00322 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC16.03■□□□□ 0.16
UPK1AO00322 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.03■□□□□ 0.16
UPK1AO00322 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
UPK1AO00322 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
UPK1AO00322 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
UPK1AO00322 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
UPK1AO00322 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
UPK1AO00322 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
UPK1AO00322 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
UPK1AO00322 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
UPK1AO00322 AL590787.1-201ENST00000568856 1315 ntBASIC16.02■□□□□ 0.16
UPK1AO00322 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.02■□□□□ 0.16
UPK1AO00322 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
UPK1AO00322 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.02■□□□□ 0.16
UPK1AO00322 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC16.02■□□□□ 0.16
UPK1AO00322 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
UPK1AO00322 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
UPK1AO00322 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
UPK1AO00322 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
UPK1AO00322 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
UPK1AO00322 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
UPK1AO00322 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
UPK1AO00322 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
UPK1AO00322 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
UPK1AO00322 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
UPK1AO00322 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
UPK1AO00322 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
UPK1AO00322 DUSP5P1-201ENST00000441325 1139 ntBASIC16.02■□□□□ 0.16
UPK1AO00322 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
UPK1AO00322 SCARNA2-201ENST00000458748 420 ntBASIC16.02■□□□□ 0.16
UPK1AO00322 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.02■□□□□ 0.16
UPK1AO00322 MTDHP4-201ENST00000600287 670 ntBASIC16.02■□□□□ 0.16
UPK1AO00322 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.02■□□□□ 0.16
UPK1AO00322 AL589182.2-201ENST00000619332 1049 ntBASIC16.02■□□□□ 0.16
UPK1AO00322 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
UPK1AO00322 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
UPK1AO00322 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
UPK1AO00322 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
UPK1AO00322 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
UPK1AO00322 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
UPK1AO00322 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
UPK1AO00322 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
UPK1AO00322 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
UPK1AO00322 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
UPK1AO00322 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
UPK1AO00322 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
UPK1AO00322 AL513477.1-201ENST00000602865 2407 ntBASIC16.02■□□□□ 0.15
UPK1AO00322 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.01■□□□□ 0.15
UPK1AO00322 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
UPK1AO00322 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
UPK1AO00322 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC16.01■□□□□ 0.15
UPK1AO00322 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
UPK1AO00322 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC16.01■□□□□ 0.15
UPK1AO00322 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.01■□□□□ 0.15
UPK1AO00322 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
UPK1AO00322 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms