Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.19■□□□□ 0.18
PCDHGA1Q9Y5H4 HLA-DQB1-201ENST00000374943 1656 ntBASIC16.19■□□□□ 0.18
PCDHGA1Q9Y5H4 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC16.19■□□□□ 0.18
PCDHGA1Q9Y5H4 AC022144.1-201ENST00000602255 1580 ntBASIC16.19■□□□□ 0.18
PCDHGA1Q9Y5H4 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.19■□□□□ 0.18
PCDHGA1Q9Y5H4 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC16.19■□□□□ 0.18
PCDHGA1Q9Y5H4 TSSK5P-201ENST00000423978 907 ntBASIC16.19■□□□□ 0.18
PCDHGA1Q9Y5H4 MEIS3P1-201ENST00000495167 958 ntBASIC16.19■□□□□ 0.18
PCDHGA1Q9Y5H4 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
PCDHGA1Q9Y5H4 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC16.19■□□□□ 0.18
PCDHGA1Q9Y5H4 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC16.19■□□□□ 0.18
PCDHGA1Q9Y5H4 COQ9-214ENST00000567933 882 ntTSL 3 BASIC16.19■□□□□ 0.18
PCDHGA1Q9Y5H4 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC16.19■□□□□ 0.18
PCDHGA1Q9Y5H4 AC004233.3-201ENST00000607794 1269 ntBASIC16.19■□□□□ 0.18
PCDHGA1Q9Y5H4 AC018529.1-201ENST00000613063 361 ntBASIC16.19■□□□□ 0.18
PCDHGA1Q9Y5H4 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
PCDHGA1Q9Y5H4 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC16.19■□□□□ 0.18
PCDHGA1Q9Y5H4 NOC2LP1-202ENST00000452600 2235 ntBASIC16.19■□□□□ 0.18
PCDHGA1Q9Y5H4 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDHGA1Q9Y5H4 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDHGA1Q9Y5H4 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.19■□□□□ 0.18
PCDHGA1Q9Y5H4 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
PCDHGA1Q9Y5H4 CU639417.3-201ENST00000624240 1404 ntBASIC16.19■□□□□ 0.18
PCDHGA1Q9Y5H4 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDHGA1Q9Y5H4 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC16.19■□□□□ 0.18
PCDHGA1Q9Y5H4 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC16.18■□□□□ 0.18
PCDHGA1Q9Y5H4 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PCDHGA1Q9Y5H4 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PCDHGA1Q9Y5H4 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PCDHGA1Q9Y5H4 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
PCDHGA1Q9Y5H4 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
PCDHGA1Q9Y5H4 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC16.18■□□□□ 0.18
PCDHGA1Q9Y5H4 TOP3BP1-201ENST00000420768 1380 ntBASIC16.18■□□□□ 0.18
PCDHGA1Q9Y5H4 TDG-209ENST00000544861 1387 ntTSL 2 BASIC16.18■□□□□ 0.18
PCDHGA1Q9Y5H4 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC16.18■□□□□ 0.18
PCDHGA1Q9Y5H4 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PCDHGA1Q9Y5H4 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PCDHGA1Q9Y5H4 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC16.18■□□□□ 0.18
PCDHGA1Q9Y5H4 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
PCDHGA1Q9Y5H4 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PCDHGA1Q9Y5H4 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.18■□□□□ 0.18
PCDHGA1Q9Y5H4 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC16.18■□□□□ 0.18
PCDHGA1Q9Y5H4 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC16.18■□□□□ 0.18
PCDHGA1Q9Y5H4 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
PCDHGA1Q9Y5H4 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC16.18■□□□□ 0.18
PCDHGA1Q9Y5H4 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
PCDHGA1Q9Y5H4 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC16.18■□□□□ 0.18
PCDHGA1Q9Y5H4 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.18■□□□□ 0.18
PCDHGA1Q9Y5H4 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PCDHGA1Q9Y5H4 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
PCDHGA1Q9Y5H4 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 AC018470.1-201ENST00000624790 3129 ntBASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 AC007274.1-201ENST00000439805 662 ntBASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 HLA-V-204ENST00000476601 1289 ntBASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 AC105233.2-201ENST00000523697 349 ntBASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 AF228730.5-201ENST00000530288 346 ntBASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 AC007967.4-201ENST00000614700 386 ntBASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 MADD-208ENST00000405573 1823 ntTSL 5 BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
PCDHGA1Q9Y5H4 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms