Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 FAM86C2P-203ENST00000528684 1004 ntBASIC17.82■□□□□ 0.44
CDH9Q9ULB4 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC17.82■□□□□ 0.44
CDH9Q9ULB4 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
CDH9Q9ULB4 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
CDH9Q9ULB4 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDH9Q9ULB4 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDH9Q9ULB4 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.82■□□□□ 0.44
CDH9Q9ULB4 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
CDH9Q9ULB4 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDH9Q9ULB4 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
CDH9Q9ULB4 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDH9Q9ULB4 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDH9Q9ULB4 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDH9Q9ULB4 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDH9Q9ULB4 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC17.82■□□□□ 0.44
CDH9Q9ULB4 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC17.82■□□□□ 0.44
CDH9Q9ULB4 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDH9Q9ULB4 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC17.82■□□□□ 0.44
CDH9Q9ULB4 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDH9Q9ULB4 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 SLC9A3P2-201ENST00000447821 2021 ntBASIC17.81■□□□□ 0.44
CDH9Q9ULB4 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 AL671277.1-201ENST00000429656 993 ntBASIC17.81■□□□□ 0.44
CDH9Q9ULB4 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 ADH5P3-201ENST00000433842 1137 ntBASIC17.81■□□□□ 0.44
CDH9Q9ULB4 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CDH9Q9ULB4 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CDH9Q9ULB4 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDH9Q9ULB4 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH9Q9ULB4 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC17.8■□□□□ 0.44
CDH9Q9ULB4 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.8■□□□□ 0.44
CDH9Q9ULB4 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDH9Q9ULB4 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.8■□□□□ 0.44
CDH9Q9ULB4 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH9Q9ULB4 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC17.8■□□□□ 0.44
CDH9Q9ULB4 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH9Q9ULB4 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH9Q9ULB4 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC17.8■□□□□ 0.44
CDH9Q9ULB4 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC17.8■□□□□ 0.44
CDH9Q9ULB4 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC17.8■□□□□ 0.44
CDH9Q9ULB4 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDH9Q9ULB4 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH9Q9ULB4 SNHG9-202ENST00000564014 471 ntBASIC17.8■□□□□ 0.44
CDH9Q9ULB4 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC17.8■□□□□ 0.44
CDH9Q9ULB4 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC17.8■□□□□ 0.44
CDH9Q9ULB4 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDH9Q9ULB4 AL596442.2-201ENST00000610240 980 ntBASIC17.8■□□□□ 0.44
CDH9Q9ULB4 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
CDH9Q9ULB4 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CDH9Q9ULB4 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH9Q9ULB4 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.8■□□□□ 0.44
CDH9Q9ULB4 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDH9Q9ULB4 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC17.8■□□□□ 0.44
CDH9Q9ULB4 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH9Q9ULB4 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CDH9Q9ULB4 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH9Q9ULB4 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH9Q9ULB4 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH9Q9ULB4 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH9Q9ULB4 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
CDH9Q9ULB4 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
CDH9Q9ULB4 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
CDH9Q9ULB4 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH9Q9ULB4 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDH9Q9ULB4 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms