Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC16.71■□□□□ 0.27
MKS1Q9NXB0 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
MKS1Q9NXB0 LINC01238-205ENST00000567549 1107 ntBASIC16.71■□□□□ 0.27
MKS1Q9NXB0 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.71■□□□□ 0.27
MKS1Q9NXB0 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
MKS1Q9NXB0 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC16.71■□□□□ 0.27
MKS1Q9NXB0 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.71■□□□□ 0.27
MKS1Q9NXB0 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MKS1Q9NXB0 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
MKS1Q9NXB0 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC16.71■□□□□ 0.27
MKS1Q9NXB0 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
MKS1Q9NXB0 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MKS1Q9NXB0 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MKS1Q9NXB0 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MKS1Q9NXB0 AC006449.6-201ENST00000612330 2296 ntBASIC16.71■□□□□ 0.27
MKS1Q9NXB0 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC16.71■□□□□ 0.26
MKS1Q9NXB0 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
MKS1Q9NXB0 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
MKS1Q9NXB0 AL590787.1-201ENST00000568856 1315 ntBASIC16.7■□□□□ 0.26
MKS1Q9NXB0 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 TOP3BP1-201ENST00000420768 1380 ntBASIC16.7■□□□□ 0.26
MKS1Q9NXB0 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 SOD2-201ENST00000337404 991 ntTSL 2 BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 AL353135.1-201ENST00000606729 504 ntBASIC16.7■□□□□ 0.26
MKS1Q9NXB0 AL121672.3-201ENST00000608644 468 ntBASIC16.7■□□□□ 0.26
MKS1Q9NXB0 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 HLA-DQB2-231ENST00000435145 2026 ntBASIC16.7■□□□□ 0.26
MKS1Q9NXB0 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC16.7■□□□□ 0.26
MKS1Q9NXB0 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.69■□□□□ 0.26
MKS1Q9NXB0 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC16.69■□□□□ 0.26
MKS1Q9NXB0 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
MKS1Q9NXB0 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MKS1Q9NXB0 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MKS1Q9NXB0 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MKS1Q9NXB0 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
MKS1Q9NXB0 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MKS1Q9NXB0 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MKS1Q9NXB0 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.69■□□□□ 0.26
MKS1Q9NXB0 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC16.69■□□□□ 0.26
MKS1Q9NXB0 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
MKS1Q9NXB0 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
MKS1Q9NXB0 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
MKS1Q9NXB0 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MKS1Q9NXB0 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MKS1Q9NXB0 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MKS1Q9NXB0 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
MKS1Q9NXB0 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC16.69■□□□□ 0.26
MKS1Q9NXB0 RCN1P2-201ENST00000398357 915 ntBASIC16.69■□□□□ 0.26
MKS1Q9NXB0 COX5A-202ENST00000562233 441 ntTSL 3 BASIC16.69■□□□□ 0.26
MKS1Q9NXB0 COX5A-204ENST00000567270 579 ntTSL 3 BASIC16.69■□□□□ 0.26
MKS1Q9NXB0 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC16.69■□□□□ 0.26
MKS1Q9NXB0 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.69■□□□□ 0.26
MKS1Q9NXB0 AC114341.1-201ENST00000618070 349 ntBASIC16.69■□□□□ 0.26
MKS1Q9NXB0 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
MKS1Q9NXB0 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MKS1Q9NXB0 AL512652.2-201ENST00000625156 1716 ntBASIC16.69■□□□□ 0.26
MKS1Q9NXB0 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MKS1Q9NXB0 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.69■□□□□ 0.26
MKS1Q9NXB0 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.69■□□□□ 0.26
MKS1Q9NXB0 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
MKS1Q9NXB0 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
MKS1Q9NXB0 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
MKS1Q9NXB0 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MKS1Q9NXB0 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
MKS1Q9NXB0 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.69■□□□□ 0.26
MKS1Q9NXB0 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms