Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SIX2Q9NPC8 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SIX2Q9NPC8 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
SIX2Q9NPC8 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SIX2Q9NPC8 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SIX2Q9NPC8 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SIX2Q9NPC8 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC18.11■□□□□ 0.49
SIX2Q9NPC8 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
SIX2Q9NPC8 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SIX2Q9NPC8 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
SIX2Q9NPC8 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SIX2Q9NPC8 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
SIX2Q9NPC8 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC18.11■□□□□ 0.49
SIX2Q9NPC8 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
SIX2Q9NPC8 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
SIX2Q9NPC8 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC18.11■□□□□ 0.49
SIX2Q9NPC8 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC18.11■□□□□ 0.49
SIX2Q9NPC8 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC18.11■□□□□ 0.49
SIX2Q9NPC8 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC18.11■□□□□ 0.49
SIX2Q9NPC8 GGTLC5P-201ENST00000617623 998 ntBASIC18.11■□□□□ 0.49
SIX2Q9NPC8 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
SIX2Q9NPC8 KRT8P39-201ENST00000396270 1433 ntBASIC18.11■□□□□ 0.49
SIX2Q9NPC8 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SIX2Q9NPC8 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
SIX2Q9NPC8 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SIX2Q9NPC8 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
SIX2Q9NPC8 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
SIX2Q9NPC8 AL031731.1-201ENST00000642131 2094 ntBASIC18.11■□□□□ 0.49
SIX2Q9NPC8 BANP-204ENST00000393208 2283 ntTSL 2 BASIC18.11■□□□□ 0.49
SIX2Q9NPC8 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
SIX2Q9NPC8 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC18.11■□□□□ 0.49
SIX2Q9NPC8 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SIX2Q9NPC8 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC18.11■□□□□ 0.49
SIX2Q9NPC8 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC18.11■□□□□ 0.49
SIX2Q9NPC8 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SIX2Q9NPC8 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
SIX2Q9NPC8 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SIX2Q9NPC8 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SIX2Q9NPC8 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
SIX2Q9NPC8 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SIX2Q9NPC8 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
SIX2Q9NPC8 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
SIX2Q9NPC8 AL391005.1-201ENST00000623953 2435 ntBASIC18.1■□□□□ 0.49
SIX2Q9NPC8 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SIX2Q9NPC8 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC18.1■□□□□ 0.49
SIX2Q9NPC8 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
SIX2Q9NPC8 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC18.1■□□□□ 0.49
SIX2Q9NPC8 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SIX2Q9NPC8 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
SIX2Q9NPC8 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
SIX2Q9NPC8 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC18.1■□□□□ 0.49
SIX2Q9NPC8 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SIX2Q9NPC8 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SIX2Q9NPC8 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC18.1■□□□□ 0.49
SIX2Q9NPC8 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC18.1■□□□□ 0.49
SIX2Q9NPC8 MED22-202ENST00000371999 987 ntTSL 3 BASIC18.1■□□□□ 0.49
SIX2Q9NPC8 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SIX2Q9NPC8 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SIX2Q9NPC8 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SIX2Q9NPC8 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC18.1■□□□□ 0.49
SIX2Q9NPC8 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC18.1■□□□□ 0.49
SIX2Q9NPC8 RPS29-206ENST00000557111 488 ntTSL 2 BASIC18.1■□□□□ 0.49
SIX2Q9NPC8 CYB561-216ENST00000582297 897 ntTSL 3 BASIC18.1■□□□□ 0.49
SIX2Q9NPC8 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC18.1■□□□□ 0.49
SIX2Q9NPC8 CYP2A7P1-201ENST00000595391 815 ntBASIC18.1■□□□□ 0.49
SIX2Q9NPC8 AL049840.3-201ENST00000602669 611 ntBASIC18.1■□□□□ 0.49
SIX2Q9NPC8 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
SIX2Q9NPC8 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC18.1■□□□□ 0.49
SIX2Q9NPC8 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
SIX2Q9NPC8 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
SIX2Q9NPC8 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SIX2Q9NPC8 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC18.1■□□□□ 0.49
SIX2Q9NPC8 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SIX2Q9NPC8 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
SIX2Q9NPC8 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC18.09■□□□□ 0.49
SIX2Q9NPC8 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SIX2Q9NPC8 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC18.09■□□□□ 0.49
SIX2Q9NPC8 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SIX2Q9NPC8 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
SIX2Q9NPC8 AL353732.1-201ENST00000569618 1459 ntBASIC18.09■□□□□ 0.49
SIX2Q9NPC8 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC18.09■□□□□ 0.49
SIX2Q9NPC8 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SIX2Q9NPC8 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
SIX2Q9NPC8 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SIX2Q9NPC8 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SIX2Q9NPC8 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
SIX2Q9NPC8 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC18.09■□□□□ 0.49
SIX2Q9NPC8 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
SIX2Q9NPC8 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SIX2Q9NPC8 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC18.09■□□□□ 0.49
SIX2Q9NPC8 MOK-208ENST00000519058 917 ntTSL 2 BASIC18.09■□□□□ 0.49
SIX2Q9NPC8 MMP17-203ENST00000535004 719 ntTSL 3 BASIC18.09■□□□□ 0.49
SIX2Q9NPC8 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC18.09■□□□□ 0.49
SIX2Q9NPC8 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC18.09■□□□□ 0.49
SIX2Q9NPC8 SIGLEC29P-201ENST00000599873 1114 ntBASIC18.09■□□□□ 0.49
SIX2Q9NPC8 MIR7706-201ENST00000613747 67 ntBASIC18.09■□□□□ 0.49
SIX2Q9NPC8 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC18.09■□□□□ 0.49
SIX2Q9NPC8 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC18.09■□□□□ 0.49
SIX2Q9NPC8 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC18.09■□□□□ 0.49
SIX2Q9NPC8 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms