Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC21.54■■□□□ 1.04
SHANK3Q9BYB0 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SHANK3Q9BYB0 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC21.53■■□□□ 1.04
SHANK3Q9BYB0 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
SHANK3Q9BYB0 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SHANK3Q9BYB0 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SHANK3Q9BYB0 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC21.53■■□□□ 1.04
SHANK3Q9BYB0 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC21.53■■□□□ 1.04
SHANK3Q9BYB0 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SHANK3Q9BYB0 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC21.53■■□□□ 1.04
SHANK3Q9BYB0 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC21.53■■□□□ 1.04
SHANK3Q9BYB0 AL353779.1-201ENST00000434793 351 ntBASIC21.53■■□□□ 1.04
SHANK3Q9BYB0 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC21.53■■□□□ 1.04
SHANK3Q9BYB0 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC21.53■■□□□ 1.04
SHANK3Q9BYB0 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SHANK3Q9BYB0 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SHANK3Q9BYB0 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
SHANK3Q9BYB0 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC21.53■■□□□ 1.04
SHANK3Q9BYB0 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SHANK3Q9BYB0 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SHANK3Q9BYB0 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
SHANK3Q9BYB0 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SHANK3Q9BYB0 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC21.52■■□□□ 1.04
SHANK3Q9BYB0 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC21.52■■□□□ 1.04
SHANK3Q9BYB0 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC21.52■■□□□ 1.04
SHANK3Q9BYB0 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC21.52■■□□□ 1.04
SHANK3Q9BYB0 AC006277.1-201ENST00000624348 1610 ntBASIC21.52■■□□□ 1.04
SHANK3Q9BYB0 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SHANK3Q9BYB0 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SHANK3Q9BYB0 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC21.52■■□□□ 1.04
SHANK3Q9BYB0 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC21.52■■□□□ 1.04
SHANK3Q9BYB0 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC21.52■■□□□ 1.04
SHANK3Q9BYB0 AC007541.1-201ENST00000570282 1469 ntBASIC21.52■■□□□ 1.04
SHANK3Q9BYB0 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
SHANK3Q9BYB0 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
SHANK3Q9BYB0 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC21.52■■□□□ 1.03
SHANK3Q9BYB0 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
SHANK3Q9BYB0 MAX-210ENST00000555419 765 ntTSL 5 BASIC21.52■■□□□ 1.03
SHANK3Q9BYB0 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC21.52■■□□□ 1.03
SHANK3Q9BYB0 AC099568.2-201ENST00000609194 695 ntBASIC21.52■■□□□ 1.03
SHANK3Q9BYB0 RPSAP52-203ENST00000622976 1023 ntBASIC21.52■■□□□ 1.03
SHANK3Q9BYB0 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC21.52■■□□□ 1.03
SHANK3Q9BYB0 AL033527.4-201ENST00000641026 673 ntBASIC21.52■■□□□ 1.03
SHANK3Q9BYB0 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC21.52■■□□□ 1.03
SHANK3Q9BYB0 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
SHANK3Q9BYB0 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC21.52■■□□□ 1.03
SHANK3Q9BYB0 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 CROCCP2-202ENST00000412962 2773 ntBASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 MXI1-205ENST00000393134 889 ntTSL 2 BASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 TTTY23B-201ENST00000442790 549 ntBASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 AC008735.3-201ENST00000596646 500 ntBASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC21.51■■□□□ 1.03
SHANK3Q9BYB0 AL023806.1-201ENST00000603994 1649 ntBASIC21.5■■□□□ 1.03
SHANK3Q9BYB0 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHANK3Q9BYB0 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
SHANK3Q9BYB0 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC21.5■■□□□ 1.03
SHANK3Q9BYB0 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
SHANK3Q9BYB0 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
SHANK3Q9BYB0 VMO1-203ENST00000416307 712 ntTSL 2 BASIC21.5■■□□□ 1.03
SHANK3Q9BYB0 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC21.5■■□□□ 1.03
SHANK3Q9BYB0 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SHANK3Q9BYB0 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC21.5■■□□□ 1.03
SHANK3Q9BYB0 SRD5A3P1-201ENST00000603021 949 ntBASIC21.5■■□□□ 1.03
SHANK3Q9BYB0 AC092053.1-201ENST00000605787 1936 ntBASIC21.5■■□□□ 1.03
SHANK3Q9BYB0 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC21.5■■□□□ 1.03
SHANK3Q9BYB0 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC21.5■■□□□ 1.03
SHANK3Q9BYB0 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHANK3Q9BYB0 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC21.5■■□□□ 1.03
SHANK3Q9BYB0 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms