Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NUP88Q99567 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC19.77■□□□□ 0.76
NUP88Q99567 AC080080.1-201ENST00000625121 2420 ntBASIC19.77■□□□□ 0.76
NUP88Q99567 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NUP88Q99567 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
NUP88Q99567 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NUP88Q99567 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
NUP88Q99567 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
NUP88Q99567 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
NUP88Q99567 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC19.77■□□□□ 0.75
NUP88Q99567 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC19.77■□□□□ 0.75
NUP88Q99567 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
NUP88Q99567 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NUP88Q99567 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NUP88Q99567 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC19.76■□□□□ 0.75
NUP88Q99567 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC19.76■□□□□ 0.75
NUP88Q99567 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
NUP88Q99567 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC19.76■□□□□ 0.75
NUP88Q99567 AC009053.2-201ENST00000563701 2365 ntBASIC19.76■□□□□ 0.75
NUP88Q99567 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
NUP88Q99567 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NUP88Q99567 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC19.76■□□□□ 0.75
NUP88Q99567 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NUP88Q99567 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC19.76■□□□□ 0.75
NUP88Q99567 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NUP88Q99567 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
NUP88Q99567 HMGN1P19-201ENST00000436976 333 ntBASIC19.76■□□□□ 0.75
NUP88Q99567 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NUP88Q99567 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NUP88Q99567 RPS15-207ENST00000591032 550 ntTSL 3 BASIC19.76■□□□□ 0.75
NUP88Q99567 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC19.76■□□□□ 0.75
NUP88Q99567 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC19.76■□□□□ 0.75
NUP88Q99567 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NUP88Q99567 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC19.76■□□□□ 0.75
NUP88Q99567 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
NUP88Q99567 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NUP88Q99567 PCDHA12-202ENST00000613593 2588 ntBASIC19.76■□□□□ 0.75
NUP88Q99567 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
NUP88Q99567 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC19.76■□□□□ 0.75
NUP88Q99567 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC19.76■□□□□ 0.75
NUP88Q99567 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NUP88Q99567 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NUP88Q99567 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NUP88Q99567 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
NUP88Q99567 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NUP88Q99567 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
NUP88Q99567 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
NUP88Q99567 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC19.75■□□□□ 0.75
NUP88Q99567 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
NUP88Q99567 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
NUP88Q99567 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC19.75■□□□□ 0.75
NUP88Q99567 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
NUP88Q99567 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NUP88Q99567 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC19.75■□□□□ 0.75
NUP88Q99567 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC19.75■□□□□ 0.75
NUP88Q99567 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NUP88Q99567 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
NUP88Q99567 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NUP88Q99567 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NUP88Q99567 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
NUP88Q99567 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC19.75■□□□□ 0.75
NUP88Q99567 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NUP88Q99567 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC19.75■□□□□ 0.75
NUP88Q99567 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
NUP88Q99567 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NUP88Q99567 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
NUP88Q99567 AC004461.1-201ENST00000412461 403 ntBASIC19.75■□□□□ 0.75
NUP88Q99567 ACTG1P14-201ENST00000446382 1122 ntBASIC19.75■□□□□ 0.75
NUP88Q99567 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC19.75■□□□□ 0.75
NUP88Q99567 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC19.75■□□□□ 0.75
NUP88Q99567 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC19.75■□□□□ 0.75
NUP88Q99567 IGHV3OR16-6-201ENST00000568775 360 ntBASIC19.75■□□□□ 0.75
NUP88Q99567 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC19.75■□□□□ 0.75
NUP88Q99567 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC19.75■□□□□ 0.75
NUP88Q99567 AL513210.1-201ENST00000629608 234 ntBASIC19.75■□□□□ 0.75
NUP88Q99567 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC19.75■□□□□ 0.75
NUP88Q99567 AC105339.1-204ENST00000636249 355 ntBASIC19.75■□□□□ 0.75
NUP88Q99567 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
NUP88Q99567 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC19.75■□□□□ 0.75
NUP88Q99567 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC19.75■□□□□ 0.75
NUP88Q99567 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC19.75■□□□□ 0.75
NUP88Q99567 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC19.75■□□□□ 0.75
NUP88Q99567 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
NUP88Q99567 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
NUP88Q99567 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC19.75■□□□□ 0.75
NUP88Q99567 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NUP88Q99567 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NUP88Q99567 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC19.74■□□□□ 0.75
NUP88Q99567 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
NUP88Q99567 AL138688.1-201ENST00000624851 1594 ntBASIC19.74■□□□□ 0.75
NUP88Q99567 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NUP88Q99567 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC19.74■□□□□ 0.75
NUP88Q99567 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NUP88Q99567 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
NUP88Q99567 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
NUP88Q99567 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NUP88Q99567 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NUP88Q99567 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
NUP88Q99567 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NUP88Q99567 ADH5P3-201ENST00000433842 1137 ntBASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms