Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
BRF1Q92994 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC19.91■□□□□ 0.78
BRF1Q92994 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
BRF1Q92994 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
BRF1Q92994 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
BRF1Q92994 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC19.91■□□□□ 0.78
BRF1Q92994 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC19.91■□□□□ 0.78
BRF1Q92994 AMT-206ENST00000458307 1860 ntTSL 2 BASIC19.91■□□□□ 0.78
BRF1Q92994 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
BRF1Q92994 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC19.91■□□□□ 0.78
BRF1Q92994 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC19.91■□□□□ 0.78
BRF1Q92994 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
BRF1Q92994 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
BRF1Q92994 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC19.91■□□□□ 0.78
BRF1Q92994 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC19.91■□□□□ 0.78
BRF1Q92994 RPS29-206ENST00000557111 488 ntTSL 2 BASIC19.91■□□□□ 0.78
BRF1Q92994 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC19.91■□□□□ 0.78
BRF1Q92994 AL773604.1-201ENST00000617417 272 ntBASIC19.91■□□□□ 0.78
BRF1Q92994 MIR1199-201ENST00000621445 119 ntBASIC19.91■□□□□ 0.78
BRF1Q92994 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC19.91■□□□□ 0.78
BRF1Q92994 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
BRF1Q92994 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
BRF1Q92994 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC19.91■□□□□ 0.78
BRF1Q92994 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC19.91■□□□□ 0.78
BRF1Q92994 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC19.91■□□□□ 0.78
BRF1Q92994 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
BRF1Q92994 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
BRF1Q92994 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
BRF1Q92994 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
BRF1Q92994 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
BRF1Q92994 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
BRF1Q92994 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC19.9■□□□□ 0.78
BRF1Q92994 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
BRF1Q92994 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
BRF1Q92994 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
BRF1Q92994 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
BRF1Q92994 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
BRF1Q92994 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
BRF1Q92994 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
BRF1Q92994 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
BRF1Q92994 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
BRF1Q92994 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
BRF1Q92994 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
BRF1Q92994 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
BRF1Q92994 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC19.9■□□□□ 0.78
BRF1Q92994 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
BRF1Q92994 PPIE-208ENST00000470213 927 ntTSL 3 BASIC19.9■□□□□ 0.78
BRF1Q92994 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC19.9■□□□□ 0.78
BRF1Q92994 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC19.9■□□□□ 0.78
BRF1Q92994 AC008667.4-201ENST00000607370 168 ntBASIC19.9■□□□□ 0.78
BRF1Q92994 ABBA01031661.1-201ENST00000634362 1253 ntBASIC19.9■□□□□ 0.78
BRF1Q92994 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC19.9■□□□□ 0.78
BRF1Q92994 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
BRF1Q92994 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
BRF1Q92994 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC19.9■□□□□ 0.78
BRF1Q92994 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
BRF1Q92994 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC19.9■□□□□ 0.78
BRF1Q92994 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
BRF1Q92994 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
BRF1Q92994 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
BRF1Q92994 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
BRF1Q92994 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.78
BRF1Q92994 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
BRF1Q92994 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.78
BRF1Q92994 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC19.89■□□□□ 0.77
BRF1Q92994 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
BRF1Q92994 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
BRF1Q92994 RPS2P28-201ENST00000314255 741 ntBASIC19.89■□□□□ 0.77
BRF1Q92994 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
BRF1Q92994 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC19.89■□□□□ 0.77
BRF1Q92994 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC19.89■□□□□ 0.77
BRF1Q92994 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
BRF1Q92994 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC19.89■□□□□ 0.77
BRF1Q92994 AL031284.1-201ENST00000419297 478 ntBASIC19.89■□□□□ 0.77
BRF1Q92994 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC19.89■□□□□ 0.77
BRF1Q92994 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC19.89■□□□□ 0.77
BRF1Q92994 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
BRF1Q92994 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
BRF1Q92994 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
BRF1Q92994 RNA5SP419-201ENST00000515908 135 ntBASIC19.89■□□□□ 0.77
BRF1Q92994 IGHV3-65-201ENST00000523210 341 ntBASIC19.89■□□□□ 0.77
BRF1Q92994 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC19.89■□□□□ 0.77
BRF1Q92994 RIN3-211ENST00000557762 517 ntTSL 3 BASIC19.89■□□□□ 0.77
BRF1Q92994 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC19.89■□□□□ 0.77
BRF1Q92994 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
BRF1Q92994 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC19.89■□□□□ 0.77
BRF1Q92994 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC19.89■□□□□ 0.77
BRF1Q92994 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
BRF1Q92994 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
BRF1Q92994 AC117500.6-201ENST00000624871 588 ntBASIC19.89■□□□□ 0.77
BRF1Q92994 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
BRF1Q92994 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
BRF1Q92994 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC19.88■□□□□ 0.77
BRF1Q92994 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
BRF1Q92994 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC19.88■□□□□ 0.77
BRF1Q92994 AC006277.1-201ENST00000624348 1610 ntBASIC19.88■□□□□ 0.77
BRF1Q92994 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
BRF1Q92994 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC19.88■□□□□ 0.77
BRF1Q92994 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC19.88■□□□□ 0.77
BRF1Q92994 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms