Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 AC084121.3-201ENST00000641716 218 ntBASIC16.92■□□□□ 0.3
HMGB4Q8WW32 AC105233.6-201ENST00000642093 218 ntBASIC16.92■□□□□ 0.3
HMGB4Q8WW32 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 PPP6R2P1-201ENST00000450880 1275 ntBASIC16.91■□□□□ 0.3
HMGB4Q8WW32 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 AC069120.2-201ENST00000524091 540 ntBASIC16.91■□□□□ 0.3
HMGB4Q8WW32 GATD1-206ENST00000526325 756 ntTSL 5 BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 AP000842.3-202ENST00000569238 1080 ntBASIC16.91■□□□□ 0.3
HMGB4Q8WW32 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 AC084121.4-201ENST00000641598 221 ntBASIC16.91■□□□□ 0.3
HMGB4Q8WW32 AF228730.8-201ENST00000642140 221 ntBASIC16.91■□□□□ 0.3
HMGB4Q8WW32 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 AC016027.1-202ENST00000607927 1699 ntBASIC16.91■□□□□ 0.3
HMGB4Q8WW32 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
HMGB4Q8WW32 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB4Q8WW32 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB4Q8WW32 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB4Q8WW32 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.9■□□□□ 0.3
HMGB4Q8WW32 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC16.9■□□□□ 0.3
HMGB4Q8WW32 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB4Q8WW32 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB4Q8WW32 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB4Q8WW32 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB4Q8WW32 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC16.9■□□□□ 0.3
HMGB4Q8WW32 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB4Q8WW32 MIR661-201ENST00000384842 89 ntBASIC16.9■□□□□ 0.3
HMGB4Q8WW32 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB4Q8WW32 AC005034.1-201ENST00000426657 489 ntBASIC16.9■□□□□ 0.3
HMGB4Q8WW32 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
HMGB4Q8WW32 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC16.9■□□□□ 0.3
HMGB4Q8WW32 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC16.9■□□□□ 0.3
HMGB4Q8WW32 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC16.9■□□□□ 0.3
HMGB4Q8WW32 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC16.9■□□□□ 0.3
HMGB4Q8WW32 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB4Q8WW32 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.9■□□□□ 0.3
HMGB4Q8WW32 AC135050.7-201ENST00000624508 2218 ntBASIC16.9■□□□□ 0.3
HMGB4Q8WW32 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB4Q8WW32 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB4Q8WW32 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB4Q8WW32 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB4Q8WW32 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.9■□□□□ 0.3
HMGB4Q8WW32 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC16.9■□□□□ 0.3
HMGB4Q8WW32 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB4Q8WW32 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB4Q8WW32 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.9■□□□□ 0.3
HMGB4Q8WW32 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
HMGB4Q8WW32 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB4Q8WW32 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB4Q8WW32 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.89■□□□□ 0.3
HMGB4Q8WW32 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
HMGB4Q8WW32 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB4Q8WW32 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
HMGB4Q8WW32 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB4Q8WW32 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB4Q8WW32 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms