Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 WDR53-203ENST00000429115 683 ntTSL 2 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 VPS29-207ENST00000549970 818 ntTSL 3 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 TBC1D3P5-201ENST00000579401 1545 ntBASIC5.26□□□□□ -1.57
SYNE1Q8NF91 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 KCNMA1-265ENST00000639591 3888 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 LHX6-205ENST00000464484 666 ntTSL 2 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 AC005829.1-201ENST00000570002 483 ntBASIC5.26□□□□□ -1.57
SYNE1Q8NF91 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 PIAS2-201ENST00000324794 4543 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 HNRNPA1P28-201ENST00000424481 961 ntBASIC5.26□□□□□ -1.57
SYNE1Q8NF91 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 AL353135.1-201ENST00000606729 504 ntBASIC5.26□□□□□ -1.57
SYNE1Q8NF91 EML1-203ENST00000334192 4064 ntTSL 5 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 AC093010.1-201ENST00000473625 1624 ntBASIC5.25□□□□□ -1.57
SYNE1Q8NF91 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 SLC4A1APP2-201ENST00000424054 1259 ntBASIC5.25□□□□□ -1.57
SYNE1Q8NF91 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 AC022145.2-201ENST00000598203 171 ntBASIC5.25□□□□□ -1.57
SYNE1Q8NF91 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 PNKD-204ENST00000436005 978 ntTSL 5 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms