Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 AL023775.1-201ENST00000454907 1746 ntBASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 ST20-AS1-201ENST00000560255 4223 ntBASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 GMCL1P1-201ENST00000463439 1581 ntBASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 POM121L13P-201ENST00000422362 380 ntBASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 UNC93B5-201ENST00000530315 699 ntBASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 HLA-A-209ENST00000638375 975 ntBASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 ING5-213ENST00000636051 4199 ntTSL 5 BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC14.18□□□□□ -0.14
CCDC28AQ8IWP9 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 KRT8P3-201ENST00000519669 1449 ntBASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC14.17□□□□□ -0.14
CCDC28AQ8IWP9 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms