Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 SPDYE15P-201ENST00000424157 909 ntBASIC15.2■□□□□ 0.02
CCDC58Q4VC31 AC007967.3-201ENST00000434308 558 ntBASIC15.2■□□□□ 0.02
CCDC58Q4VC31 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC15.2■□□□□ 0.02
CCDC58Q4VC31 AL441883.1-201ENST00000566170 1045 ntBASIC15.2■□□□□ 0.02
CCDC58Q4VC31 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC15.2■□□□□ 0.02
CCDC58Q4VC31 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC15.2■□□□□ 0.02
CCDC58Q4VC31 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC58Q4VC31 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC58Q4VC31 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC58Q4VC31 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC58Q4VC31 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC15.2■□□□□ 0.02
CCDC58Q4VC31 CICP14-201ENST00000629111 2732 ntBASIC15.2■□□□□ 0.02
CCDC58Q4VC31 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC15.2■□□□□ 0.02
CCDC58Q4VC31 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC58Q4VC31 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC58Q4VC31 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
CCDC58Q4VC31 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC15.19■□□□□ 0.02
CCDC58Q4VC31 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
CCDC58Q4VC31 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC58Q4VC31 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC15.19■□□□□ 0.02
CCDC58Q4VC31 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
CCDC58Q4VC31 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC58Q4VC31 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC58Q4VC31 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC15.19■□□□□ 0.02
CCDC58Q4VC31 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC58Q4VC31 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC58Q4VC31 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC58Q4VC31 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC58Q4VC31 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC58Q4VC31 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
CCDC58Q4VC31 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC15.19■□□□□ 0.02
CCDC58Q4VC31 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
CCDC58Q4VC31 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC15.19■□□□□ 0.02
CCDC58Q4VC31 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
CCDC58Q4VC31 AC063926.3-201ENST00000624734 5658 ntBASIC15.19■□□□□ 0.02
CCDC58Q4VC31 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC58Q4VC31 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC15.19■□□□□ 0.02
CCDC58Q4VC31 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC58Q4VC31 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC15.19■□□□□ 0.02
CCDC58Q4VC31 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC58Q4VC31 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
CCDC58Q4VC31 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC15.19■□□□□ 0.02
CCDC58Q4VC31 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC58Q4VC31 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC15.19■□□□□ 0.02
CCDC58Q4VC31 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC58Q4VC31 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC58Q4VC31 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC58Q4VC31 AC092171.3-201ENST00000610122 2651 ntBASIC15.19■□□□□ 0.02
CCDC58Q4VC31 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC58Q4VC31 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 AC092384.3-202ENST00000564646 2873 ntBASIC15.18■□□□□ 0.02
CCDC58Q4VC31 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 GXYLT1P3-201ENST00000453058 1193 ntBASIC15.18■□□□□ 0.02
CCDC58Q4VC31 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 AC005332.3-201ENST00000589904 676 ntBASIC15.18■□□□□ 0.02
CCDC58Q4VC31 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 GPR89P-201ENST00000407924 1495 ntBASIC15.18■□□□□ 0.02
CCDC58Q4VC31 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 AL049757.1-201ENST00000616842 1596 ntBASIC15.18■□□□□ 0.02
CCDC58Q4VC31 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC58Q4VC31 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 FRMD8P1-201ENST00000440433 1524 ntBASIC15.17■□□□□ 0.02
CCDC58Q4VC31 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC15.17■□□□□ 0.02
CCDC58Q4VC31 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms