Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC16.29■□□□□ 0.2
COL28A1Q2UY09 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.29■□□□□ 0.2
COL28A1Q2UY09 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC16.29■□□□□ 0.2
COL28A1Q2UY09 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC16.29■□□□□ 0.2
COL28A1Q2UY09 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
COL28A1Q2UY09 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC16.29■□□□□ 0.2
COL28A1Q2UY09 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL28A1Q2UY09 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC16.28■□□□□ 0.2
COL28A1Q2UY09 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC16.28■□□□□ 0.2
COL28A1Q2UY09 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL28A1Q2UY09 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.28■□□□□ 0.2
COL28A1Q2UY09 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL28A1Q2UY09 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL28A1Q2UY09 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL28A1Q2UY09 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
COL28A1Q2UY09 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL28A1Q2UY09 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL28A1Q2UY09 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
COL28A1Q2UY09 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
COL28A1Q2UY09 PCDHA12-202ENST00000613593 2588 ntBASIC16.28■□□□□ 0.2
COL28A1Q2UY09 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC16.28■□□□□ 0.2
COL28A1Q2UY09 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL28A1Q2UY09 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC16.28■□□□□ 0.2
COL28A1Q2UY09 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL28A1Q2UY09 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.28■□□□□ 0.2
COL28A1Q2UY09 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC16.28■□□□□ 0.2
COL28A1Q2UY09 ADH5P3-201ENST00000433842 1137 ntBASIC16.28■□□□□ 0.2
COL28A1Q2UY09 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC16.28■□□□□ 0.2
COL28A1Q2UY09 AC069335.1-201ENST00000489972 472 ntBASIC16.28■□□□□ 0.2
COL28A1Q2UY09 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC16.28■□□□□ 0.2
COL28A1Q2UY09 GGTLC5P-201ENST00000617623 998 ntBASIC16.28■□□□□ 0.2
COL28A1Q2UY09 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.28■□□□□ 0.2
COL28A1Q2UY09 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
COL28A1Q2UY09 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL28A1Q2UY09 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL28A1Q2UY09 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL28A1Q2UY09 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL28A1Q2UY09 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL28A1Q2UY09 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL28A1Q2UY09 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL28A1Q2UY09 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL28A1Q2UY09 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL28A1Q2UY09 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL28A1Q2UY09 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL28A1Q2UY09 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC16.27■□□□□ 0.2
COL28A1Q2UY09 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL28A1Q2UY09 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL28A1Q2UY09 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL28A1Q2UY09 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.2
COL28A1Q2UY09 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL28A1Q2UY09 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC16.27■□□□□ 0.2
COL28A1Q2UY09 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC16.27■□□□□ 0.2
COL28A1Q2UY09 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL28A1Q2UY09 AC009949.1-201ENST00000623048 1830 ntBASIC16.27■□□□□ 0.2
COL28A1Q2UY09 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
COL28A1Q2UY09 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
COL28A1Q2UY09 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL28A1Q2UY09 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL28A1Q2UY09 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL28A1Q2UY09 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL28A1Q2UY09 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC16.27■□□□□ 0.2
COL28A1Q2UY09 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC16.27■□□□□ 0.2
COL28A1Q2UY09 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC16.27■□□□□ 0.2
COL28A1Q2UY09 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC16.27■□□□□ 0.2
COL28A1Q2UY09 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC16.27■□□□□ 0.2
COL28A1Q2UY09 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL28A1Q2UY09 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL28A1Q2UY09 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC16.27■□□□□ 0.2
COL28A1Q2UY09 BAD-207ENST00000544785 525 ntTSL 3 BASIC16.27■□□□□ 0.2
COL28A1Q2UY09 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC16.27■□□□□ 0.2
COL28A1Q2UY09 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16.27■□□□□ 0.2
COL28A1Q2UY09 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16.27■□□□□ 0.2
COL28A1Q2UY09 SPDYE22P-201ENST00000582158 798 ntBASIC16.27■□□□□ 0.2
COL28A1Q2UY09 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC16.27■□□□□ 0.2
COL28A1Q2UY09 IFT20-216ENST00000588477 774 ntTSL 5 BASIC16.27■□□□□ 0.2
COL28A1Q2UY09 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL28A1Q2UY09 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.27■□□□□ 0.2
COL28A1Q2UY09 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC16.27■□□□□ 0.19
COL28A1Q2UY09 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL28A1Q2UY09 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC16.27■□□□□ 0.19
COL28A1Q2UY09 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
COL28A1Q2UY09 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
COL28A1Q2UY09 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL28A1Q2UY09 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL28A1Q2UY09 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.27■□□□□ 0.19
COL28A1Q2UY09 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL28A1Q2UY09 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL28A1Q2UY09 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL28A1Q2UY09 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
COL28A1Q2UY09 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC16.27■□□□□ 0.19
COL28A1Q2UY09 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
COL28A1Q2UY09 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL28A1Q2UY09 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.27■□□□□ 0.19
COL28A1Q2UY09 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL28A1Q2UY09 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
COL28A1Q2UY09 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL28A1Q2UY09 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
COL28A1Q2UY09 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL28A1Q2UY09 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
COL28A1Q2UY09 AC148477.5-201ENST00000625164 1645 ntBASIC16.27■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms