Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
ABCA4P78363 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC14.53□□□□□ -0.08
ABCA4P78363 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC14.53□□□□□ -0.08
ABCA4P78363 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
ABCA4P78363 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
ABCA4P78363 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
ABCA4P78363 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
ABCA4P78363 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
ABCA4P78363 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
ABCA4P78363 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC14.53□□□□□ -0.08
ABCA4P78363 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC14.53□□□□□ -0.08
ABCA4P78363 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
ABCA4P78363 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
ABCA4P78363 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
ABCA4P78363 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
ABCA4P78363 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
ABCA4P78363 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
ABCA4P78363 AC004890.2-204ENST00000481968 304 ntBASIC14.53□□□□□ -0.08
ABCA4P78363 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC14.53□□□□□ -0.08
ABCA4P78363 SLC25A39P2-201ENST00000537614 270 ntBASIC14.53□□□□□ -0.08
ABCA4P78363 KRT8P23-201ENST00000560090 1207 ntBASIC14.53□□□□□ -0.08
ABCA4P78363 AL596325.1-201ENST00000563991 1082 ntBASIC14.53□□□□□ -0.08
ABCA4P78363 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
ABCA4P78363 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
ABCA4P78363 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC14.53□□□□□ -0.08
ABCA4P78363 AC012569.1-201ENST00000591191 1524 ntBASIC14.53□□□□□ -0.08
ABCA4P78363 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
ABCA4P78363 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
ABCA4P78363 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
ABCA4P78363 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
ABCA4P78363 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC14.53□□□□□ -0.08
ABCA4P78363 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
ABCA4P78363 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
ABCA4P78363 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
ABCA4P78363 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
ABCA4P78363 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
ABCA4P78363 F11R-206ENST00000621309 4770 ntTSL 5 BASIC14.52□□□□□ -0.08
ABCA4P78363 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
ABCA4P78363 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
ABCA4P78363 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
ABCA4P78363 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
ABCA4P78363 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC14.52□□□□□ -0.08
ABCA4P78363 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
ABCA4P78363 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
ABCA4P78363 RNU1-129P-201ENST00000384064 167 ntBASIC14.52□□□□□ -0.08
ABCA4P78363 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
ABCA4P78363 PIN1P1-201ENST00000412108 996 ntBASIC14.52□□□□□ -0.08
ABCA4P78363 U1.21-201ENST00000580816 167 ntBASIC14.52□□□□□ -0.08
ABCA4P78363 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
ABCA4P78363 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC14.52□□□□□ -0.08
ABCA4P78363 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.08
ABCA4P78363 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
ABCA4P78363 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
ABCA4P78363 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC14.52□□□□□ -0.09
ABCA4P78363 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
ABCA4P78363 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC14.52□□□□□ -0.09
ABCA4P78363 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
ABCA4P78363 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
ABCA4P78363 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
ABCA4P78363 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC14.52□□□□□ -0.09
ABCA4P78363 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC14.52□□□□□ -0.09
ABCA4P78363 TPR-209ENST00000613151 2478 ntTSL 5 BASIC14.52□□□□□ -0.09
ABCA4P78363 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
ABCA4P78363 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC14.52□□□□□ -0.09
ABCA4P78363 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
ABCA4P78363 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
ABCA4P78363 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
ABCA4P78363 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC14.52□□□□□ -0.09
ABCA4P78363 RBPMS2P1-201ENST00000437762 623 ntBASIC14.52□□□□□ -0.09
ABCA4P78363 SPDYE14P-201ENST00000442619 822 ntBASIC14.52□□□□□ -0.09
ABCA4P78363 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
ABCA4P78363 NAA50-208ENST00000497255 789 ntTSL 5 BASIC14.52□□□□□ -0.09
ABCA4P78363 MTRF1LP2-201ENST00000506027 1122 ntBASIC14.52□□□□□ -0.09
ABCA4P78363 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC14.52□□□□□ -0.09
ABCA4P78363 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC14.52□□□□□ -0.09
ABCA4P78363 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
ABCA4P78363 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC14.52□□□□□ -0.09
ABCA4P78363 AL590560.3-201ENST00000623350 461 ntBASIC14.52□□□□□ -0.09
ABCA4P78363 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
ABCA4P78363 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
ABCA4P78363 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC14.51□□□□□ -0.09
ABCA4P78363 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC14.51□□□□□ -0.09
ABCA4P78363 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
ABCA4P78363 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
ABCA4P78363 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
ABCA4P78363 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC14.51□□□□□ -0.09
ABCA4P78363 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC14.51□□□□□ -0.09
ABCA4P78363 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
ABCA4P78363 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
ABCA4P78363 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC14.51□□□□□ -0.09
ABCA4P78363 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
ABCA4P78363 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
ABCA4P78363 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
ABCA4P78363 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC14.51□□□□□ -0.09
ABCA4P78363 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
ABCA4P78363 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC14.51□□□□□ -0.09
ABCA4P78363 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC14.51□□□□□ -0.09
ABCA4P78363 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
ABCA4P78363 RN7SL589P-201ENST00000481268 310 ntBASIC14.51□□□□□ -0.09
ABCA4P78363 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms