Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LIG3P49916 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LIG3P49916 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
LIG3P49916 RCN1P2-201ENST00000398357 915 ntBASIC17.87■□□□□ 0.45
LIG3P49916 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC17.87■□□□□ 0.45
LIG3P49916 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LIG3P49916 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
LIG3P49916 AC009533.2-201ENST00000543664 586 ntBASIC17.87■□□□□ 0.45
LIG3P49916 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.87■□□□□ 0.45
LIG3P49916 MIR5100-201ENST00000579544 119 ntBASIC17.87■□□□□ 0.45
LIG3P49916 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC17.87■□□□□ 0.45
LIG3P49916 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC17.87■□□□□ 0.45
LIG3P49916 IGHV3OR16-7-201ENST00000604106 360 ntBASIC17.87■□□□□ 0.45
LIG3P49916 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
LIG3P49916 AC114341.1-201ENST00000618070 349 ntBASIC17.87■□□□□ 0.45
LIG3P49916 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
LIG3P49916 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
LIG3P49916 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LIG3P49916 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC17.87■□□□□ 0.45
LIG3P49916 MBP-202ENST00000355994 2772 ntTSL 5 BASIC17.87■□□□□ 0.45
LIG3P49916 AL662844.4-201ENST00000606367 2838 ntBASIC17.87■□□□□ 0.45
LIG3P49916 LYSMD4-203ENST00000378904 2122 ntBASIC17.87■□□□□ 0.45
LIG3P49916 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LIG3P49916 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC17.87■□□□□ 0.45
LIG3P49916 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC17.87■□□□□ 0.45
LIG3P49916 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LIG3P49916 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
LIG3P49916 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
LIG3P49916 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC17.87■□□□□ 0.45
LIG3P49916 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
LIG3P49916 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LIG3P49916 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
LIG3P49916 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.87■□□□□ 0.45
LIG3P49916 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LIG3P49916 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LIG3P49916 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC17.87■□□□□ 0.45
LIG3P49916 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LIG3P49916 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LIG3P49916 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LIG3P49916 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LIG3P49916 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LIG3P49916 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LIG3P49916 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
LIG3P49916 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
LIG3P49916 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LIG3P49916 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC17.86■□□□□ 0.45
LIG3P49916 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
LIG3P49916 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC17.86■□□□□ 0.45
LIG3P49916 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
LIG3P49916 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
LIG3P49916 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC17.86■□□□□ 0.45
LIG3P49916 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LIG3P49916 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC17.86■□□□□ 0.45
LIG3P49916 EMBP1-201ENST00000458200 901 ntBASIC17.86■□□□□ 0.45
LIG3P49916 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC17.86■□□□□ 0.45
LIG3P49916 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC17.86■□□□□ 0.45
LIG3P49916 AL591684.3-201ENST00000605187 298 ntBASIC17.86■□□□□ 0.45
LIG3P49916 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
LIG3P49916 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC17.86■□□□□ 0.45
LIG3P49916 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
LIG3P49916 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC17.86■□□□□ 0.45
LIG3P49916 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LIG3P49916 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
LIG3P49916 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LIG3P49916 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
LIG3P49916 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
LIG3P49916 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
LIG3P49916 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.86■□□□□ 0.45
LIG3P49916 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LIG3P49916 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC17.86■□□□□ 0.45
LIG3P49916 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
LIG3P49916 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LIG3P49916 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
LIG3P49916 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LIG3P49916 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
LIG3P49916 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC17.85■□□□□ 0.45
LIG3P49916 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC17.85■□□□□ 0.45
LIG3P49916 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
LIG3P49916 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LIG3P49916 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LIG3P49916 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LIG3P49916 AC004870.1-201ENST00000315132 882 ntBASIC17.85■□□□□ 0.45
LIG3P49916 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
LIG3P49916 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
LIG3P49916 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LIG3P49916 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC17.85■□□□□ 0.45
LIG3P49916 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LIG3P49916 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
LIG3P49916 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
LIG3P49916 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC17.85■□□□□ 0.45
LIG3P49916 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
LIG3P49916 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
LIG3P49916 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
LIG3P49916 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LIG3P49916 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC17.85■□□□□ 0.45
LIG3P49916 THAP5-204ENST00000438865 868 ntTSL 2 BASIC17.85■□□□□ 0.45
LIG3P49916 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC17.85■□□□□ 0.45
LIG3P49916 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
LIG3P49916 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC17.85■□□□□ 0.45
LIG3P49916 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC17.85■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms