Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CXCL12P48061 AC133963.1-201ENST00000504166 1679 ntBASIC16.69■□□□□ 0.26
CXCL12P48061 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC16.69■□□□□ 0.26
CXCL12P48061 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
CXCL12P48061 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
CXCL12P48061 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC16.69■□□□□ 0.26
CXCL12P48061 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
CXCL12P48061 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CXCL12P48061 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
CXCL12P48061 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC16.69■□□□□ 0.26
CXCL12P48061 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC16.69■□□□□ 0.26
CXCL12P48061 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
CXCL12P48061 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CXCL12P48061 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CXCL12P48061 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC16.69■□□□□ 0.26
CXCL12P48061 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CXCL12P48061 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC16.69■□□□□ 0.26
CXCL12P48061 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC16.69■□□□□ 0.26
CXCL12P48061 AC105021.1-202ENST00000570572 669 ntBASIC16.69■□□□□ 0.26
CXCL12P48061 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC16.69■□□□□ 0.26
CXCL12P48061 AC132938.2-201ENST00000579188 680 ntBASIC16.69■□□□□ 0.26
CXCL12P48061 MIR4492-201ENST00000581627 80 ntBASIC16.69■□□□□ 0.26
CXCL12P48061 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC16.69■□□□□ 0.26
CXCL12P48061 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC16.69■□□□□ 0.26
CXCL12P48061 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
CXCL12P48061 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CXCL12P48061 AL591163.1-201ENST00000641757 987 ntBASIC16.69■□□□□ 0.26
CXCL12P48061 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CXCL12P48061 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
CXCL12P48061 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CXCL12P48061 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CXCL12P48061 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
CXCL12P48061 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CXCL12P48061 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CXCL12P48061 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.69■□□□□ 0.26
CXCL12P48061 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC16.69■□□□□ 0.26
CXCL12P48061 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CXCL12P48061 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CXCL12P48061 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CXCL12P48061 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CXCL12P48061 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CXCL12P48061 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CXCL12P48061 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.68■□□□□ 0.26
CXCL12P48061 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC16.68■□□□□ 0.26
CXCL12P48061 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC16.68■□□□□ 0.26
CXCL12P48061 AL355312.1-201ENST00000407115 2176 ntBASIC16.68■□□□□ 0.26
CXCL12P48061 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
CXCL12P48061 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16.68■□□□□ 0.26
CXCL12P48061 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC16.68■□□□□ 0.26
CXCL12P48061 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC16.68■□□□□ 0.26
CXCL12P48061 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
CXCL12P48061 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC16.68■□□□□ 0.26
CXCL12P48061 OSM-203ENST00000403463 464 ntTSL 3 BASIC16.68■□□□□ 0.26
CXCL12P48061 PGF-202ENST00000405431 666 ntTSL 5 BASIC16.68■□□□□ 0.26
CXCL12P48061 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
CXCL12P48061 ACA64.2-201ENST00000459014 129 ntBASIC16.68■□□□□ 0.26
CXCL12P48061 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC16.68■□□□□ 0.26
CXCL12P48061 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC16.68■□□□□ 0.26
CXCL12P48061 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC16.68■□□□□ 0.26
CXCL12P48061 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC16.68■□□□□ 0.26
CXCL12P48061 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC16.68■□□□□ 0.26
CXCL12P48061 MIR6805-201ENST00000615055 62 ntBASIC16.68■□□□□ 0.26
CXCL12P48061 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
CXCL12P48061 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC16.68■□□□□ 0.26
CXCL12P48061 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CXCL12P48061 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
CXCL12P48061 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
CXCL12P48061 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.68■□□□□ 0.26
CXCL12P48061 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CXCL12P48061 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
CXCL12P48061 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC16.68■□□□□ 0.26
CXCL12P48061 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
CXCL12P48061 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.68■□□□□ 0.26
CXCL12P48061 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CXCL12P48061 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CXCL12P48061 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC16.68■□□□□ 0.26
CXCL12P48061 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC16.68■□□□□ 0.26
CXCL12P48061 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CXCL12P48061 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC16.67■□□□□ 0.26
CXCL12P48061 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.67■□□□□ 0.26
CXCL12P48061 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC16.67■□□□□ 0.26
CXCL12P48061 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CXCL12P48061 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
CXCL12P48061 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
CXCL12P48061 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC16.67■□□□□ 0.26
CXCL12P48061 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
CXCL12P48061 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CXCL12P48061 BX323043.1-201ENST00000641006 1765 ntBASIC16.67■□□□□ 0.26
CXCL12P48061 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
CXCL12P48061 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.67■□□□□ 0.26
CXCL12P48061 ABALON-201ENST00000629058 1903 ntBASIC16.67■□□□□ 0.26
CXCL12P48061 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CXCL12P48061 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CXCL12P48061 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
CXCL12P48061 MIR1909-201ENST00000411312 80 ntBASIC16.67■□□□□ 0.26
CXCL12P48061 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC16.67■□□□□ 0.26
CXCL12P48061 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC16.67■□□□□ 0.26
CXCL12P48061 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
CXCL12P48061 AC098859.1-201ENST00000502915 1238 ntBASIC16.67■□□□□ 0.26
CXCL12P48061 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms