Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC005332.8-201ENST00000622750 2735 ntBASIC14.73□□□□□ -0.05
COL8A1P27658 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL8A1P27658 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL8A1P27658 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL8A1P27658 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL8A1P27658 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL8A1P27658 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL8A1P27658 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL8A1P27658 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL8A1P27658 EFTUD1P1-204ENST00000560401 1798 ntBASIC14.73□□□□□ -0.05
COL8A1P27658 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL8A1P27658 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL8A1P27658 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL8A1P27658 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL8A1P27658 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
COL8A1P27658 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC14.73□□□□□ -0.05
COL8A1P27658 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL8A1P27658 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC14.73□□□□□ -0.05
COL8A1P27658 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL8A1P27658 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL8A1P27658 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC14.73□□□□□ -0.05
COL8A1P27658 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL8A1P27658 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC14.73□□□□□ -0.05
COL8A1P27658 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
COL8A1P27658 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL8A1P27658 USB1-203ENST00000539737 1212 ntTSL 2 BASIC14.73□□□□□ -0.05
COL8A1P27658 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC14.73□□□□□ -0.05
COL8A1P27658 TMEM261P1-201ENST00000604899 340 ntBASIC14.73□□□□□ -0.05
COL8A1P27658 AC008267.7-201ENST00000624570 1194 ntBASIC14.73□□□□□ -0.05
COL8A1P27658 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL8A1P27658 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
COL8A1P27658 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL8A1P27658 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC14.73□□□□□ -0.05
COL8A1P27658 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL8A1P27658 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL8A1P27658 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC14.73□□□□□ -0.05
COL8A1P27658 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
COL8A1P27658 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL8A1P27658 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC14.73□□□□□ -0.05
COL8A1P27658 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC14.73□□□□□ -0.05
COL8A1P27658 AC104581.1-202ENST00000635932 2618 ntBASIC14.73□□□□□ -0.05
COL8A1P27658 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL8A1P27658 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL8A1P27658 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL8A1P27658 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC14.73□□□□□ -0.05
COL8A1P27658 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
COL8A1P27658 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL8A1P27658 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
COL8A1P27658 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL8A1P27658 AC018470.1-201ENST00000624790 3129 ntBASIC14.72□□□□□ -0.05
COL8A1P27658 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL8A1P27658 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL8A1P27658 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL8A1P27658 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL8A1P27658 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL8A1P27658 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL8A1P27658 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL8A1P27658 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC14.72□□□□□ -0.05
COL8A1P27658 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC14.72□□□□□ -0.05
COL8A1P27658 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL8A1P27658 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL8A1P27658 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL8A1P27658 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL8A1P27658 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL8A1P27658 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC14.72□□□□□ -0.05
COL8A1P27658 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL8A1P27658 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL8A1P27658 MIR346-201ENST00000362234 95 ntBASIC14.72□□□□□ -0.05
COL8A1P27658 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
COL8A1P27658 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
COL8A1P27658 HAUS4P1-201ENST00000406739 1145 ntBASIC14.72□□□□□ -0.05
COL8A1P27658 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL8A1P27658 AC004945.1-201ENST00000416738 983 ntBASIC14.72□□□□□ -0.05
COL8A1P27658 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
COL8A1P27658 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC14.72□□□□□ -0.05
COL8A1P27658 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC14.72□□□□□ -0.05
COL8A1P27658 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
COL8A1P27658 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC14.72□□□□□ -0.05
COL8A1P27658 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
COL8A1P27658 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
COL8A1P27658 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC14.72□□□□□ -0.05
COL8A1P27658 PARP8-206ENST00000503665 572 ntTSL 4 BASIC14.72□□□□□ -0.05
COL8A1P27658 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC14.72□□□□□ -0.05
COL8A1P27658 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC14.72□□□□□ -0.05
COL8A1P27658 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL8A1P27658 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC14.72□□□□□ -0.05
COL8A1P27658 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC14.72□□□□□ -0.05
COL8A1P27658 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC14.72□□□□□ -0.05
COL8A1P27658 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC14.72□□□□□ -0.05
COL8A1P27658 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL8A1P27658 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL8A1P27658 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC14.72□□□□□ -0.05
COL8A1P27658 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL8A1P27658 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL8A1P27658 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC14.72□□□□□ -0.05
COL8A1P27658 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC14.72□□□□□ -0.05
COL8A1P27658 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL8A1P27658 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL8A1P27658 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC14.72□□□□□ -0.05
COL8A1P27658 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms