Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
HLA-DOAP06340 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC19.86■□□□□ 0.77
HLA-DOAP06340 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC19.86■□□□□ 0.77
HLA-DOAP06340 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HLA-DOAP06340 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC19.86■□□□□ 0.77
HLA-DOAP06340 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
HLA-DOAP06340 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HLA-DOAP06340 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC19.85■□□□□ 0.77
HLA-DOAP06340 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HLA-DOAP06340 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HLA-DOAP06340 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
HLA-DOAP06340 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HLA-DOAP06340 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HLA-DOAP06340 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
HLA-DOAP06340 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
HLA-DOAP06340 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC19.85■□□□□ 0.77
HLA-DOAP06340 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HLA-DOAP06340 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC19.85■□□□□ 0.77
HLA-DOAP06340 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HLA-DOAP06340 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC19.85■□□□□ 0.77
HLA-DOAP06340 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC19.85■□□□□ 0.77
HLA-DOAP06340 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC19.85■□□□□ 0.77
HLA-DOAP06340 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC19.85■□□□□ 0.77
HLA-DOAP06340 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
HLA-DOAP06340 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
HLA-DOAP06340 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HLA-DOAP06340 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC19.85■□□□□ 0.77
HLA-DOAP06340 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
HLA-DOAP06340 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
HLA-DOAP06340 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HLA-DOAP06340 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HLA-DOAP06340 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HLA-DOAP06340 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HLA-DOAP06340 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HLA-DOAP06340 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HLA-DOAP06340 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HLA-DOAP06340 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
HLA-DOAP06340 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
HLA-DOAP06340 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
HLA-DOAP06340 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
HLA-DOAP06340 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
HLA-DOAP06340 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
HLA-DOAP06340 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC19.84■□□□□ 0.77
HLA-DOAP06340 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HLA-DOAP06340 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC19.84■□□□□ 0.77
HLA-DOAP06340 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HLA-DOAP06340 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
HLA-DOAP06340 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
HLA-DOAP06340 GPS2P2-201ENST00000430745 888 ntBASIC19.84■□□□□ 0.77
HLA-DOAP06340 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC19.84■□□□□ 0.77
HLA-DOAP06340 AL512356.2-201ENST00000546955 174 ntBASIC19.84■□□□□ 0.77
HLA-DOAP06340 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC19.84■□□□□ 0.77
HLA-DOAP06340 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
HLA-DOAP06340 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
HLA-DOAP06340 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HLA-DOAP06340 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
HLA-DOAP06340 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
HLA-DOAP06340 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HLA-DOAP06340 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
HLA-DOAP06340 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HLA-DOAP06340 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
HLA-DOAP06340 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HLA-DOAP06340 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HLA-DOAP06340 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
HLA-DOAP06340 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
HLA-DOAP06340 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC19.83■□□□□ 0.77
HLA-DOAP06340 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
HLA-DOAP06340 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
HLA-DOAP06340 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HLA-DOAP06340 PTMS-202ENST00000389462 773 ntTSL 2 BASIC19.83■□□□□ 0.77
HLA-DOAP06340 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC19.83■□□□□ 0.77
HLA-DOAP06340 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC19.83■□□□□ 0.77
HLA-DOAP06340 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.77
HLA-DOAP06340 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HLA-DOAP06340 AC027307.2-201ENST00000591252 911 ntBASIC19.83■□□□□ 0.77
HLA-DOAP06340 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC19.83■□□□□ 0.77
HLA-DOAP06340 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
HLA-DOAP06340 AC084121.4-201ENST00000641598 221 ntBASIC19.83■□□□□ 0.77
HLA-DOAP06340 AF228730.8-201ENST00000642140 221 ntBASIC19.83■□□□□ 0.77
HLA-DOAP06340 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
HLA-DOAP06340 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
HLA-DOAP06340 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
HLA-DOAP06340 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC19.83■□□□□ 0.76
HLA-DOAP06340 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
HLA-DOAP06340 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC19.83■□□□□ 0.76
HLA-DOAP06340 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HLA-DOAP06340 AL133373.2-201ENST00000623187 2828 ntBASIC19.83■□□□□ 0.76
HLA-DOAP06340 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
HLA-DOAP06340 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HLA-DOAP06340 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HLA-DOAP06340 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HLA-DOAP06340 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HLA-DOAP06340 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HLA-DOAP06340 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC19.82■□□□□ 0.76
HLA-DOAP06340 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC19.82■□□□□ 0.76
HLA-DOAP06340 CD99-202ENST00000381180 530 ntTSL 2 BASIC19.82■□□□□ 0.76
HLA-DOAP06340 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
HLA-DOAP06340 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
HLA-DOAP06340 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HLA-DOAP06340 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms