Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HOXC11O43248 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
HOXC11O43248 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HOXC11O43248 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
HOXC11O43248 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HOXC11O43248 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
HOXC11O43248 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HOXC11O43248 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HOXC11O43248 MIR346-201ENST00000362234 95 ntBASIC17.15■□□□□ 0.34
HOXC11O43248 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
HOXC11O43248 CD99-202ENST00000381180 530 ntTSL 2 BASIC17.15■□□□□ 0.34
HOXC11O43248 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC17.15■□□□□ 0.34
HOXC11O43248 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HOXC11O43248 SPDYE14P-201ENST00000442619 822 ntBASIC17.15■□□□□ 0.34
HOXC11O43248 BCRP1-201ENST00000444246 691 ntBASIC17.15■□□□□ 0.34
HOXC11O43248 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC17.15■□□□□ 0.34
HOXC11O43248 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HOXC11O43248 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC17.15■□□□□ 0.34
HOXC11O43248 AC026150.2-201ENST00000564693 1156 ntBASIC17.15■□□□□ 0.34
HOXC11O43248 AP000842.3-202ENST00000569238 1080 ntBASIC17.15■□□□□ 0.34
HOXC11O43248 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HOXC11O43248 AC027307.2-201ENST00000591252 911 ntBASIC17.15■□□□□ 0.34
HOXC11O43248 AC092364.2-202ENST00000597012 1073 ntBASIC17.15■□□□□ 0.34
HOXC11O43248 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC17.15■□□□□ 0.34
HOXC11O43248 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC17.15■□□□□ 0.34
HOXC11O43248 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC17.15■□□□□ 0.34
HOXC11O43248 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HOXC11O43248 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.15■□□□□ 0.34
HOXC11O43248 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
HOXC11O43248 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.15■□□□□ 0.34
HOXC11O43248 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.15■□□□□ 0.34
HOXC11O43248 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HOXC11O43248 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC17.15■□□□□ 0.34
HOXC11O43248 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HOXC11O43248 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
HOXC11O43248 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.15■□□□□ 0.34
HOXC11O43248 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HOXC11O43248 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HOXC11O43248 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HOXC11O43248 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.34
HOXC11O43248 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HOXC11O43248 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC17.14■□□□□ 0.33
HOXC11O43248 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HOXC11O43248 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.14■□□□□ 0.33
HOXC11O43248 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HOXC11O43248 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HOXC11O43248 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
HOXC11O43248 AC009053.2-201ENST00000563701 2365 ntBASIC17.14■□□□□ 0.33
HOXC11O43248 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HOXC11O43248 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HOXC11O43248 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC17.14■□□□□ 0.33
HOXC11O43248 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC17.14■□□□□ 0.33
HOXC11O43248 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC17.14■□□□□ 0.33
HOXC11O43248 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC17.14■□□□□ 0.33
HOXC11O43248 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC17.14■□□□□ 0.33
HOXC11O43248 SLC25A39P2-201ENST00000537614 270 ntBASIC17.14■□□□□ 0.33
HOXC11O43248 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
HOXC11O43248 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
HOXC11O43248 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
HOXC11O43248 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.14■□□□□ 0.33
HOXC11O43248 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HOXC11O43248 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HOXC11O43248 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HOXC11O43248 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
HOXC11O43248 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC17.14■□□□□ 0.33
HOXC11O43248 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HOXC11O43248 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC17.14■□□□□ 0.33
HOXC11O43248 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
HOXC11O43248 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
HOXC11O43248 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HOXC11O43248 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.33
HOXC11O43248 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HOXC11O43248 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC17.14■□□□□ 0.33
HOXC11O43248 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HOXC11O43248 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
HOXC11O43248 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HOXC11O43248 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.13■□□□□ 0.33
HOXC11O43248 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HOXC11O43248 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.13■□□□□ 0.33
HOXC11O43248 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HOXC11O43248 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HOXC11O43248 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HOXC11O43248 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
HOXC11O43248 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HOXC11O43248 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HOXC11O43248 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
HOXC11O43248 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
HOXC11O43248 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
HOXC11O43248 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC17.13■□□□□ 0.33
HOXC11O43248 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC17.13■□□□□ 0.33
HOXC11O43248 GATD1-206ENST00000526325 756 ntTSL 5 BASIC17.13■□□□□ 0.33
HOXC11O43248 DUT-210ENST00000559935 569 ntTSL 3 BASIC17.13■□□□□ 0.33
HOXC11O43248 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HOXC11O43248 AL390955.2-201ENST00000603032 514 ntBASIC17.13■□□□□ 0.33
HOXC11O43248 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC17.13■□□□□ 0.33
HOXC11O43248 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HOXC11O43248 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HOXC11O43248 TUBB3P1-201ENST00000405796 1332 ntBASIC17.13■□□□□ 0.33
HOXC11O43248 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
HOXC11O43248 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms