Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.51■□□□□ 0.23
HDAC3O15379 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HDAC3O15379 AC005521.1-201ENST00000393351 872 ntBASIC16.51■□□□□ 0.23
HDAC3O15379 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HDAC3O15379 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC16.51■□□□□ 0.23
HDAC3O15379 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC16.51■□□□□ 0.23
HDAC3O15379 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC16.51■□□□□ 0.23
HDAC3O15379 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HDAC3O15379 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HDAC3O15379 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HDAC3O15379 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.51■□□□□ 0.23
HDAC3O15379 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HDAC3O15379 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
HDAC3O15379 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
HDAC3O15379 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HDAC3O15379 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HDAC3O15379 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC16.51■□□□□ 0.23
HDAC3O15379 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HDAC3O15379 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
HDAC3O15379 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HDAC3O15379 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HDAC3O15379 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HDAC3O15379 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HDAC3O15379 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HDAC3O15379 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
HDAC3O15379 AC005052.1-201ENST00000625181 2492 ntBASIC16.51■□□□□ 0.23
HDAC3O15379 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
HDAC3O15379 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HDAC3O15379 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HDAC3O15379 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.5■□□□□ 0.23
HDAC3O15379 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HDAC3O15379 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HDAC3O15379 BLK-205ENST00000529894 2017 ntTSL 5 BASIC16.5■□□□□ 0.23
HDAC3O15379 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HDAC3O15379 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
HDAC3O15379 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HDAC3O15379 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.5■□□□□ 0.23
HDAC3O15379 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HDAC3O15379 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HDAC3O15379 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HDAC3O15379 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC16.5■□□□□ 0.23
HDAC3O15379 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HDAC3O15379 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC16.5■□□□□ 0.23
HDAC3O15379 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
HDAC3O15379 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
HDAC3O15379 NUS1P1-201ENST00000446295 882 ntBASIC16.5■□□□□ 0.23
HDAC3O15379 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HDAC3O15379 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC16.5■□□□□ 0.23
HDAC3O15379 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HDAC3O15379 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HDAC3O15379 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
HDAC3O15379 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HDAC3O15379 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC16.5■□□□□ 0.23
HDAC3O15379 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HDAC3O15379 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HDAC3O15379 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
HDAC3O15379 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HDAC3O15379 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC16.5■□□□□ 0.23
HDAC3O15379 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.5■□□□□ 0.23
HDAC3O15379 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC16.5■□□□□ 0.23
HDAC3O15379 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HDAC3O15379 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC16.5■□□□□ 0.23
HDAC3O15379 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HDAC3O15379 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HDAC3O15379 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HDAC3O15379 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HDAC3O15379 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.49■□□□□ 0.23
HDAC3O15379 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDAC3O15379 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HDAC3O15379 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
HDAC3O15379 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDAC3O15379 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
HDAC3O15379 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
HDAC3O15379 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDAC3O15379 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC16.49■□□□□ 0.23
HDAC3O15379 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.49■□□□□ 0.23
HDAC3O15379 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.49■□□□□ 0.23
HDAC3O15379 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.49■□□□□ 0.23
HDAC3O15379 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDAC3O15379 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDAC3O15379 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDAC3O15379 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC16.49■□□□□ 0.23
HDAC3O15379 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDAC3O15379 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDAC3O15379 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDAC3O15379 CCS-201ENST00000310190 942 ntTSL 5 BASIC16.49■□□□□ 0.23
HDAC3O15379 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC16.49■□□□□ 0.23
HDAC3O15379 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC16.49■□□□□ 0.23
HDAC3O15379 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC16.49■□□□□ 0.23
HDAC3O15379 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC16.49■□□□□ 0.23
HDAC3O15379 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDAC3O15379 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC16.49■□□□□ 0.23
HDAC3O15379 AC011498.5-201ENST00000592027 486 ntBASIC16.49■□□□□ 0.23
HDAC3O15379 AL139011.1-202ENST00000642063 584 ntBASIC16.49■□□□□ 0.23
HDAC3O15379 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDAC3O15379 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HDAC3O15379 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HDAC3O15379 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
HDAC3O15379 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDAC3O15379 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms