Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.68■□□□□ 0.26
TMX2-CTNND1H3BSU7 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TMX2-CTNND1H3BSU7 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
TMX2-CTNND1H3BSU7 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.68■□□□□ 0.26
TMX2-CTNND1H3BSU7 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TMX2-CTNND1H3BSU7 DDT-204ENST00000404092 805 ntTSL 3 BASIC16.68■□□□□ 0.26
TMX2-CTNND1H3BSU7 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC16.68■□□□□ 0.26
TMX2-CTNND1H3BSU7 METTL21AP1-201ENST00000438852 635 ntBASIC16.68■□□□□ 0.26
TMX2-CTNND1H3BSU7 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC16.68■□□□□ 0.26
TMX2-CTNND1H3BSU7 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
TMX2-CTNND1H3BSU7 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
TMX2-CTNND1H3BSU7 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TMX2-CTNND1H3BSU7 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC16.68■□□□□ 0.26
TMX2-CTNND1H3BSU7 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC16.68■□□□□ 0.26
TMX2-CTNND1H3BSU7 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.68■□□□□ 0.26
TMX2-CTNND1H3BSU7 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC16.68■□□□□ 0.26
TMX2-CTNND1H3BSU7 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.68■□□□□ 0.26
TMX2-CTNND1H3BSU7 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC16.68■□□□□ 0.26
TMX2-CTNND1H3BSU7 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.68■□□□□ 0.26
TMX2-CTNND1H3BSU7 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TMX2-CTNND1H3BSU7 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC16.68■□□□□ 0.26
TMX2-CTNND1H3BSU7 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.68■□□□□ 0.26
TMX2-CTNND1H3BSU7 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TMX2-CTNND1H3BSU7 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
TMX2-CTNND1H3BSU7 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
TMX2-CTNND1H3BSU7 ELL2P1-201ENST00000413990 1906 ntBASIC16.68■□□□□ 0.26
TMX2-CTNND1H3BSU7 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
TMX2-CTNND1H3BSU7 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TMX2-CTNND1H3BSU7 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TMX2-CTNND1H3BSU7 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TMX2-CTNND1H3BSU7 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TMX2-CTNND1H3BSU7 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC16.67■□□□□ 0.26
TMX2-CTNND1H3BSU7 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
TMX2-CTNND1H3BSU7 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TMX2-CTNND1H3BSU7 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC16.67■□□□□ 0.26
TMX2-CTNND1H3BSU7 CEND1P1-201ENST00000451006 455 ntBASIC16.67■□□□□ 0.26
TMX2-CTNND1H3BSU7 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TMX2-CTNND1H3BSU7 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC16.67■□□□□ 0.26
TMX2-CTNND1H3BSU7 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC16.67■□□□□ 0.26
TMX2-CTNND1H3BSU7 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.67■□□□□ 0.26
TMX2-CTNND1H3BSU7 PDPK2P-202ENST00000562415 1191 ntBASIC16.67■□□□□ 0.26
TMX2-CTNND1H3BSU7 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC16.67■□□□□ 0.26
TMX2-CTNND1H3BSU7 AC018845.2-201ENST00000568326 409 ntBASIC16.67■□□□□ 0.26
TMX2-CTNND1H3BSU7 AL353135.1-201ENST00000606729 504 ntBASIC16.67■□□□□ 0.26
TMX2-CTNND1H3BSU7 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
TMX2-CTNND1H3BSU7 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
TMX2-CTNND1H3BSU7 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
TMX2-CTNND1H3BSU7 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TMX2-CTNND1H3BSU7 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.67■□□□□ 0.26
TMX2-CTNND1H3BSU7 CA12-203ENST00000422263 2556 ntTSL 2 BASIC16.67■□□□□ 0.26
TMX2-CTNND1H3BSU7 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TMX2-CTNND1H3BSU7 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TMX2-CTNND1H3BSU7 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
TMX2-CTNND1H3BSU7 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
TMX2-CTNND1H3BSU7 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
TMX2-CTNND1H3BSU7 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 AL096828.2-201ENST00000567259 1965 ntBASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 NME9-203ENST00000383180 2133 ntTSL 2 BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 PCDHA14-201ENST00000506751 2298 ntBASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 PTCHD3P3-201ENST00000403073 906 ntBASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 RIN3-211ENST00000557762 517 ntTSL 3 BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
TMX2-CTNND1H3BSU7 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 126.4 ms