Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VPS9D1Q9Y2B5 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.87■□□□□ 0.29
VPS9D1Q9Y2B5 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS9D1Q9Y2B5 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS9D1Q9Y2B5 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS9D1Q9Y2B5 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.87■□□□□ 0.29
VPS9D1Q9Y2B5 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS9D1Q9Y2B5 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS9D1Q9Y2B5 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS9D1Q9Y2B5 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VPS9D1Q9Y2B5 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS9D1Q9Y2B5 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS9D1Q9Y2B5 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.87■□□□□ 0.29
VPS9D1Q9Y2B5 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS9D1Q9Y2B5 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS9D1Q9Y2B5 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS9D1Q9Y2B5 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS9D1Q9Y2B5 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
VPS9D1Q9Y2B5 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS9D1Q9Y2B5 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VPS9D1Q9Y2B5 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
VPS9D1Q9Y2B5 AC078925.2-201ENST00000624013 1973 ntBASIC16.87■□□□□ 0.29
VPS9D1Q9Y2B5 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS9D1Q9Y2B5 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS9D1Q9Y2B5 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS9D1Q9Y2B5 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS9D1Q9Y2B5 TOP3BP1-201ENST00000420768 1380 ntBASIC16.87■□□□□ 0.29
VPS9D1Q9Y2B5 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC16.87■□□□□ 0.29
VPS9D1Q9Y2B5 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS9D1Q9Y2B5 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS9D1Q9Y2B5 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS9D1Q9Y2B5 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC16.86■□□□□ 0.29
VPS9D1Q9Y2B5 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS9D1Q9Y2B5 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS9D1Q9Y2B5 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
VPS9D1Q9Y2B5 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.86■□□□□ 0.29
VPS9D1Q9Y2B5 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS9D1Q9Y2B5 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.86■□□□□ 0.29
VPS9D1Q9Y2B5 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS9D1Q9Y2B5 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.86■□□□□ 0.29
VPS9D1Q9Y2B5 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.86■□□□□ 0.29
VPS9D1Q9Y2B5 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS9D1Q9Y2B5 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS9D1Q9Y2B5 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC16.86■□□□□ 0.29
VPS9D1Q9Y2B5 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC16.86■□□□□ 0.29
VPS9D1Q9Y2B5 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.86■□□□□ 0.29
VPS9D1Q9Y2B5 TOLLIP-AS1-201ENST00000530897 939 ntBASIC16.86■□□□□ 0.29
VPS9D1Q9Y2B5 AL139317.3-201ENST00000555969 898 ntTSL 2 BASIC16.86■□□□□ 0.29
VPS9D1Q9Y2B5 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC16.86■□□□□ 0.29
VPS9D1Q9Y2B5 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC16.86■□□□□ 0.29
VPS9D1Q9Y2B5 GGTLC5P-201ENST00000617623 998 ntBASIC16.86■□□□□ 0.29
VPS9D1Q9Y2B5 AC012313.10-201ENST00000623509 926 ntBASIC16.86■□□□□ 0.29
VPS9D1Q9Y2B5 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS9D1Q9Y2B5 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.86■□□□□ 0.29
VPS9D1Q9Y2B5 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.86■□□□□ 0.29
VPS9D1Q9Y2B5 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.86■□□□□ 0.29
VPS9D1Q9Y2B5 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS9D1Q9Y2B5 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS9D1Q9Y2B5 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS9D1Q9Y2B5 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC16.86■□□□□ 0.29
VPS9D1Q9Y2B5 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS9D1Q9Y2B5 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC16.86■□□□□ 0.29
VPS9D1Q9Y2B5 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS9D1Q9Y2B5 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS9D1Q9Y2B5 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS9D1Q9Y2B5 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.86■□□□□ 0.29
VPS9D1Q9Y2B5 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS9D1Q9Y2B5 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.85■□□□□ 0.29
VPS9D1Q9Y2B5 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VPS9D1Q9Y2B5 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VPS9D1Q9Y2B5 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VPS9D1Q9Y2B5 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS9D1Q9Y2B5 AL391256.1-201ENST00000443260 1855 ntBASIC16.85■□□□□ 0.29
VPS9D1Q9Y2B5 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS9D1Q9Y2B5 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC16.85■□□□□ 0.29
VPS9D1Q9Y2B5 RPS2P28-201ENST00000314255 741 ntBASIC16.85■□□□□ 0.29
VPS9D1Q9Y2B5 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.85■□□□□ 0.29
VPS9D1Q9Y2B5 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS9D1Q9Y2B5 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms