Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 AC106795.1-205ENST00000512851 1056 ntBASIC13.73□□□□□ -0.21
FOXA2Q9Y261 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 AC008608.2-201ENST00000606089 416 ntBASIC13.73□□□□□ -0.21
FOXA2Q9Y261 AP001269.4-201ENST00000609611 512 ntBASIC13.73□□□□□ -0.21
FOXA2Q9Y261 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 AP000867.4-201ENST00000641616 219 ntBASIC13.73□□□□□ -0.21
FOXA2Q9Y261 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 PMPCAP1-201ENST00000508114 1576 ntBASIC13.73□□□□□ -0.21
FOXA2Q9Y261 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 AC092171.3-201ENST00000610122 2651 ntBASIC13.73□□□□□ -0.21
FOXA2Q9Y261 PCDHB17P-201ENST00000539533 2393 ntBASIC13.73□□□□□ -0.21
FOXA2Q9Y261 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC13.72□□□□□ -0.21
FOXA2Q9Y261 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA2Q9Y261 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC13.72□□□□□ -0.21
FOXA2Q9Y261 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC13.72□□□□□ -0.21
FOXA2Q9Y261 STK24-203ENST00000397517 4578 ntTSL 2 BASIC13.72□□□□□ -0.21
FOXA2Q9Y261 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
FOXA2Q9Y261 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA2Q9Y261 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC13.72□□□□□ -0.21
FOXA2Q9Y261 AC004870.1-201ENST00000315132 882 ntBASIC13.72□□□□□ -0.21
FOXA2Q9Y261 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA2Q9Y261 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA2Q9Y261 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC13.72□□□□□ -0.21
FOXA2Q9Y261 TLE1-202ENST00000376484 666 ntTSL 3 BASIC13.72□□□□□ -0.21
FOXA2Q9Y261 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA2Q9Y261 ACTG1P4-201ENST00000425123 1122 ntBASIC13.72□□□□□ -0.21
FOXA2Q9Y261 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA2Q9Y261 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA2Q9Y261 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC13.72□□□□□ -0.21
FOXA2Q9Y261 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA2Q9Y261 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC13.72□□□□□ -0.21
FOXA2Q9Y261 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA2Q9Y261 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC13.72□□□□□ -0.21
FOXA2Q9Y261 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC13.72□□□□□ -0.21
FOXA2Q9Y261 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC13.72□□□□□ -0.21
FOXA2Q9Y261 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
FOXA2Q9Y261 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA2Q9Y261 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC13.72□□□□□ -0.21
FOXA2Q9Y261 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC13.72□□□□□ -0.21
FOXA2Q9Y261 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC13.72□□□□□ -0.21
FOXA2Q9Y261 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA2Q9Y261 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA2Q9Y261 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
FOXA2Q9Y261 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA2Q9Y261 HLA-A-202ENST00000376806 1854 ntBASIC13.72□□□□□ -0.21
FOXA2Q9Y261 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC13.72□□□□□ -0.21
FOXA2Q9Y261 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA2Q9Y261 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA2Q9Y261 AC006449.5-201ENST00000610658 2098 ntBASIC13.71□□□□□ -0.21
FOXA2Q9Y261 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
FOXA2Q9Y261 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA2Q9Y261 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA2Q9Y261 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA2Q9Y261 CYP2T1P-202ENST00000641596 2535 ntBASIC13.71□□□□□ -0.21
FOXA2Q9Y261 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
FOXA2Q9Y261 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA2Q9Y261 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA2Q9Y261 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA2Q9Y261 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
FOXA2Q9Y261 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC13.71□□□□□ -0.21
FOXA2Q9Y261 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA2Q9Y261 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA2Q9Y261 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA2Q9Y261 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA2Q9Y261 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA2Q9Y261 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA2Q9Y261 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA2Q9Y261 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms