Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM4Q9C037 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM4Q9C037 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC17.04■□□□□ 0.32
TRIM4Q9C037 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
TRIM4Q9C037 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM4Q9C037 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM4Q9C037 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM4Q9C037 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM4Q9C037 NUS1P2-201ENST00000417358 873 ntBASIC17.04■□□□□ 0.32
TRIM4Q9C037 AL031284.1-201ENST00000419297 478 ntBASIC17.04■□□□□ 0.32
TRIM4Q9C037 FAM197Y8-203ENST00000450145 560 ntBASIC17.04■□□□□ 0.32
TRIM4Q9C037 DUTP2-201ENST00000519164 463 ntBASIC17.04■□□□□ 0.32
TRIM4Q9C037 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC17.04■□□□□ 0.32
TRIM4Q9C037 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
TRIM4Q9C037 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM4Q9C037 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
TRIM4Q9C037 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM4Q9C037 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM4Q9C037 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC17.04■□□□□ 0.32
TRIM4Q9C037 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM4Q9C037 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM4Q9C037 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC17.04■□□□□ 0.32
TRIM4Q9C037 AC132872.4-202ENST00000622924 2756 ntBASIC17.04■□□□□ 0.32
TRIM4Q9C037 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM4Q9C037 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
TRIM4Q9C037 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM4Q9C037 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
TRIM4Q9C037 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM4Q9C037 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC17.03■□□□□ 0.32
TRIM4Q9C037 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM4Q9C037 Z83836.1-201ENST00000624605 1642 ntBASIC17.03■□□□□ 0.32
TRIM4Q9C037 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
TRIM4Q9C037 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM4Q9C037 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.03■□□□□ 0.32
TRIM4Q9C037 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC17.03■□□□□ 0.32
TRIM4Q9C037 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM4Q9C037 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM4Q9C037 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
TRIM4Q9C037 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC17.03■□□□□ 0.32
TRIM4Q9C037 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM4Q9C037 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC17.03■□□□□ 0.32
TRIM4Q9C037 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
TRIM4Q9C037 CFL1-212ENST00000531413 636 ntTSL 3 BASIC17.03■□□□□ 0.32
TRIM4Q9C037 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC17.03■□□□□ 0.32
TRIM4Q9C037 TK1-205ENST00000590862 642 ntTSL 3 BASIC17.03■□□□□ 0.32
TRIM4Q9C037 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC17.03■□□□□ 0.32
TRIM4Q9C037 REXO1L6P-202ENST00000619970 1078 ntBASIC17.03■□□□□ 0.32
TRIM4Q9C037 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM4Q9C037 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM4Q9C037 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.03■□□□□ 0.32
TRIM4Q9C037 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM4Q9C037 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM4Q9C037 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM4Q9C037 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.03■□□□□ 0.32
TRIM4Q9C037 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM4Q9C037 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM4Q9C037 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM4Q9C037 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM4Q9C037 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
TRIM4Q9C037 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM4Q9C037 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM4Q9C037 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM4Q9C037 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM4Q9C037 AC243591.1-201ENST00000452967 1364 ntBASIC17.02■□□□□ 0.32
TRIM4Q9C037 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC17.02■□□□□ 0.32
TRIM4Q9C037 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
TRIM4Q9C037 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRIM4Q9C037 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
TRIM4Q9C037 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.02■□□□□ 0.32
TRIM4Q9C037 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRIM4Q9C037 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC17.02■□□□□ 0.32
TRIM4Q9C037 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
TRIM4Q9C037 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.02■□□□□ 0.32
TRIM4Q9C037 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.02■□□□□ 0.32
TRIM4Q9C037 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC17.02■□□□□ 0.32
TRIM4Q9C037 HLA-F-220ENST00000434407 884 ntBASIC17.02■□□□□ 0.32
TRIM4Q9C037 RNPS1P1-201ENST00000507437 918 ntBASIC17.02■□□□□ 0.32
TRIM4Q9C037 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
TRIM4Q9C037 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
TRIM4Q9C037 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.02■□□□□ 0.32
TRIM4Q9C037 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC17.02■□□□□ 0.32
TRIM4Q9C037 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC17.02■□□□□ 0.32
TRIM4Q9C037 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC17.02■□□□□ 0.32
TRIM4Q9C037 AC148477.8-201ENST00000624298 468 ntBASIC17.02■□□□□ 0.32
TRIM4Q9C037 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC17.02■□□□□ 0.32
TRIM4Q9C037 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
TRIM4Q9C037 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC17.02■□□□□ 0.32
TRIM4Q9C037 TCAF2P1-201ENST00000291129 2421 ntBASIC17.02■□□□□ 0.32
TRIM4Q9C037 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TRIM4Q9C037 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRIM4Q9C037 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TRIM4Q9C037 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
TRIM4Q9C037 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
TRIM4Q9C037 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
TRIM4Q9C037 AC100803.2-201ENST00000562459 1963 ntBASIC17.02■□□□□ 0.31
TRIM4Q9C037 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC17.02■□□□□ 0.31
TRIM4Q9C037 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
TRIM4Q9C037 AL365209.1-201ENST00000624418 6473 ntBASIC17.02■□□□□ 0.31
TRIM4Q9C037 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
TRIM4Q9C037 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms