Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC17.33■□□□□ 0.37
TRIM56Q9BRZ2 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM56Q9BRZ2 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.37
TRIM56Q9BRZ2 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM56Q9BRZ2 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC17.33■□□□□ 0.37
TRIM56Q9BRZ2 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM56Q9BRZ2 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM56Q9BRZ2 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.33■□□□□ 0.37
TRIM56Q9BRZ2 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM56Q9BRZ2 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
TRIM56Q9BRZ2 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM56Q9BRZ2 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM56Q9BRZ2 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
TRIM56Q9BRZ2 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM56Q9BRZ2 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM56Q9BRZ2 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM56Q9BRZ2 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM56Q9BRZ2 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM56Q9BRZ2 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
TRIM56Q9BRZ2 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM56Q9BRZ2 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC17.33■□□□□ 0.36
TRIM56Q9BRZ2 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC17.33■□□□□ 0.36
TRIM56Q9BRZ2 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM56Q9BRZ2 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.33■□□□□ 0.36
TRIM56Q9BRZ2 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC17.33■□□□□ 0.36
TRIM56Q9BRZ2 AC099336.1-202ENST00000602961 463 ntBASIC17.33■□□□□ 0.36
TRIM56Q9BRZ2 AP000867.4-201ENST00000641616 219 ntBASIC17.33■□□□□ 0.36
TRIM56Q9BRZ2 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM56Q9BRZ2 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
TRIM56Q9BRZ2 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
TRIM56Q9BRZ2 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM56Q9BRZ2 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM56Q9BRZ2 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM56Q9BRZ2 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM56Q9BRZ2 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.33■□□□□ 0.36
TRIM56Q9BRZ2 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM56Q9BRZ2 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 NUS1P2-201ENST00000417358 873 ntBASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 KRT126P-201ENST00000549467 1181 ntBASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 AC069148.1-201ENST00000608741 768 ntBASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 LINC02199-201ENST00000506655 2702 ntBASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 AL603756.1-201ENST00000606511 2163 ntBASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 AL645728.1-201ENST00000366221 2101 ntBASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
TRIM56Q9BRZ2 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM56Q9BRZ2 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC17.31■□□□□ 0.36
TRIM56Q9BRZ2 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM56Q9BRZ2 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM56Q9BRZ2 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM56Q9BRZ2 GPR89P-201ENST00000407924 1495 ntBASIC17.31■□□□□ 0.36
TRIM56Q9BRZ2 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM56Q9BRZ2 GCK-202ENST00000345378 2421 ntTSL 2 BASIC17.31■□□□□ 0.36
TRIM56Q9BRZ2 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
TRIM56Q9BRZ2 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC17.31■□□□□ 0.36
TRIM56Q9BRZ2 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC17.31■□□□□ 0.36
TRIM56Q9BRZ2 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC17.31■□□□□ 0.36
TRIM56Q9BRZ2 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
TRIM56Q9BRZ2 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
TRIM56Q9BRZ2 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM56Q9BRZ2 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM56Q9BRZ2 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM56Q9BRZ2 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
TRIM56Q9BRZ2 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
TRIM56Q9BRZ2 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
TRIM56Q9BRZ2 SPDYE21P-201ENST00000413323 827 ntBASIC17.31■□□□□ 0.36
TRIM56Q9BRZ2 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms