Protein–RNA interactions for Protein: Q96SZ6

CDK5RAP1, CDK5 regulatory subunit-associated protein 1, humanhuman

Known RBP Predictions only

Length 601 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP1Q96SZ6 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDK5RAP1Q96SZ6 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CDK5RAP1Q96SZ6 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 CDK2AP2P3-201ENST00000422476 372 ntBASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 MIR4492-201ENST00000581627 80 ntBASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 AL009183.1-201ENST00000603760 355 ntBASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 AC092919.2-201ENST00000623631 1645 ntBASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 AC092053.1-201ENST00000605787 1936 ntBASIC17.53■□□□□ 0.4
CDK5RAP1Q96SZ6 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CDK5RAP1Q96SZ6 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDK5RAP1Q96SZ6 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CDK5RAP1Q96SZ6 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CDK5RAP1Q96SZ6 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDK5RAP1Q96SZ6 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
CDK5RAP1Q96SZ6 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CDK5RAP1Q96SZ6 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CDK5RAP1Q96SZ6 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CDK5RAP1Q96SZ6 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDK5RAP1Q96SZ6 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
CDK5RAP1Q96SZ6 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC17.52■□□□□ 0.4
CDK5RAP1Q96SZ6 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDK5RAP1Q96SZ6 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDK5RAP1Q96SZ6 RNU1-129P-201ENST00000384064 167 ntBASIC17.52■□□□□ 0.4
CDK5RAP1Q96SZ6 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CDK5RAP1Q96SZ6 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
CDK5RAP1Q96SZ6 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CDK5RAP1Q96SZ6 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC17.52■□□□□ 0.4
CDK5RAP1Q96SZ6 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
CDK5RAP1Q96SZ6 PUS1-205ENST00000535067 838 ntTSL 3 BASIC17.52■□□□□ 0.4
CDK5RAP1Q96SZ6 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC17.52■□□□□ 0.4
CDK5RAP1Q96SZ6 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CDK5RAP1Q96SZ6 U1.21-201ENST00000580816 167 ntBASIC17.52■□□□□ 0.4
CDK5RAP1Q96SZ6 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC17.52■□□□□ 0.4
CDK5RAP1Q96SZ6 CYP2A7P1-201ENST00000595391 815 ntBASIC17.52■□□□□ 0.4
CDK5RAP1Q96SZ6 AC013467.2-201ENST00000605472 835 ntBASIC17.52■□□□□ 0.4
CDK5RAP1Q96SZ6 AL031055.1-201ENST00000606362 631 ntBASIC17.52■□□□□ 0.4
CDK5RAP1Q96SZ6 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CDK5RAP1Q96SZ6 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CDK5RAP1Q96SZ6 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CDK5RAP1Q96SZ6 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CDK5RAP1Q96SZ6 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
CDK5RAP1Q96SZ6 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CDK5RAP1Q96SZ6 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
CDK5RAP1Q96SZ6 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
CDK5RAP1Q96SZ6 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CDK5RAP1Q96SZ6 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDK5RAP1Q96SZ6 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC17.51■□□□□ 0.39
CDK5RAP1Q96SZ6 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
CDK5RAP1Q96SZ6 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CDK5RAP1Q96SZ6 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CDK5RAP1Q96SZ6 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC17.51■□□□□ 0.39
CDK5RAP1Q96SZ6 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CDK5RAP1Q96SZ6 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDK5RAP1Q96SZ6 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC17.51■□□□□ 0.39
CDK5RAP1Q96SZ6 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDK5RAP1Q96SZ6 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDK5RAP1Q96SZ6 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CDK5RAP1Q96SZ6 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDK5RAP1Q96SZ6 RN7SL589P-201ENST00000481268 310 ntBASIC17.51■□□□□ 0.39
CDK5RAP1Q96SZ6 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CDK5RAP1Q96SZ6 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CDK5RAP1Q96SZ6 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CDK5RAP1Q96SZ6 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC17.51■□□□□ 0.39
CDK5RAP1Q96SZ6 AP000344.2-201ENST00000512987 629 ntBASIC17.51■□□□□ 0.39
CDK5RAP1Q96SZ6 CFL1-202ENST00000524553 860 ntTSL 2 BASIC17.51■□□□□ 0.39
CDK5RAP1Q96SZ6 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC17.51■□□□□ 0.39
CDK5RAP1Q96SZ6 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms