Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
BRF1Q92994 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
BRF1Q92994 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC19.94■□□□□ 0.78
BRF1Q92994 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
BRF1Q92994 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC19.94■□□□□ 0.78
BRF1Q92994 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC19.94■□□□□ 0.78
BRF1Q92994 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC19.94■□□□□ 0.78
BRF1Q92994 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC19.94■□□□□ 0.78
BRF1Q92994 AL160237.2-201ENST00000556165 472 ntBASIC19.94■□□□□ 0.78
BRF1Q92994 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC19.94■□□□□ 0.78
BRF1Q92994 ETFA-208ENST00000559602 792 ntTSL 3 BASIC19.94■□□□□ 0.78
BRF1Q92994 AC105339.3-201ENST00000560043 636 ntBASIC19.94■□□□□ 0.78
BRF1Q92994 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC19.94■□□□□ 0.78
BRF1Q92994 AL049840.3-201ENST00000602669 611 ntBASIC19.94■□□□□ 0.78
BRF1Q92994 AL356488.2-201ENST00000602755 427 ntBASIC19.94■□□□□ 0.78
BRF1Q92994 FAM215A-202ENST00000632077 792 ntBASIC19.94■□□□□ 0.78
BRF1Q92994 AF228730.7-201ENST00000641842 219 ntBASIC19.94■□□□□ 0.78
BRF1Q92994 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
BRF1Q92994 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
BRF1Q92994 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC19.94■□□□□ 0.78
BRF1Q92994 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
BRF1Q92994 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC19.94■□□□□ 0.78
BRF1Q92994 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
BRF1Q92994 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC19.94■□□□□ 0.78
BRF1Q92994 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
BRF1Q92994 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
BRF1Q92994 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC19.94■□□□□ 0.78
BRF1Q92994 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
BRF1Q92994 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
BRF1Q92994 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC19.94■□□□□ 0.78
BRF1Q92994 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
BRF1Q92994 PC-204ENST00000524491 1714 ntTSL 2 BASIC19.93■□□□□ 0.78
BRF1Q92994 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
BRF1Q92994 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
BRF1Q92994 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC19.93■□□□□ 0.78
BRF1Q92994 GCK-202ENST00000345378 2421 ntTSL 2 BASIC19.93■□□□□ 0.78
BRF1Q92994 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
BRF1Q92994 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC19.93■□□□□ 0.78
BRF1Q92994 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
BRF1Q92994 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC19.93■□□□□ 0.78
BRF1Q92994 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC19.93■□□□□ 0.78
BRF1Q92994 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
BRF1Q92994 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC19.93■□□□□ 0.78
BRF1Q92994 MRPL3P1-201ENST00000400109 1033 ntBASIC19.93■□□□□ 0.78
BRF1Q92994 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
BRF1Q92994 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC19.93■□□□□ 0.78
BRF1Q92994 PP7080-204ENST00000510714 601 ntTSL 3 BASIC19.93■□□□□ 0.78
BRF1Q92994 AP002490.2-201ENST00000524791 560 ntBASIC19.93■□□□□ 0.78
BRF1Q92994 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
BRF1Q92994 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
BRF1Q92994 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC19.93■□□□□ 0.78
BRF1Q92994 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC19.93■□□□□ 0.78
BRF1Q92994 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
BRF1Q92994 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC19.93■□□□□ 0.78
BRF1Q92994 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
BRF1Q92994 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
BRF1Q92994 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
BRF1Q92994 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
BRF1Q92994 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC19.93■□□□□ 0.78
BRF1Q92994 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
BRF1Q92994 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
BRF1Q92994 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC19.92■□□□□ 0.78
BRF1Q92994 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC19.92■□□□□ 0.78
BRF1Q92994 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
BRF1Q92994 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
BRF1Q92994 HLA-A-202ENST00000376806 1854 ntBASIC19.92■□□□□ 0.78
BRF1Q92994 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
BRF1Q92994 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC19.92■□□□□ 0.78
BRF1Q92994 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
BRF1Q92994 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
BRF1Q92994 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC19.92■□□□□ 0.78
BRF1Q92994 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
BRF1Q92994 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC19.92■□□□□ 0.78
BRF1Q92994 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
BRF1Q92994 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
BRF1Q92994 LINC00895-201ENST00000629028 1637 ntBASIC19.92■□□□□ 0.78
BRF1Q92994 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
BRF1Q92994 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
BRF1Q92994 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC19.92■□□□□ 0.78
BRF1Q92994 INIP-202ENST00000374236 874 ntTSL 2 BASIC19.92■□□□□ 0.78
BRF1Q92994 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
BRF1Q92994 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC19.92■□□□□ 0.78
BRF1Q92994 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC19.92■□□□□ 0.78
BRF1Q92994 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC19.92■□□□□ 0.78
BRF1Q92994 MIR7706-201ENST00000613747 67 ntBASIC19.92■□□□□ 0.78
BRF1Q92994 REXO1L3P-201ENST00000622202 1288 ntBASIC19.92■□□□□ 0.78
BRF1Q92994 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC19.92■□□□□ 0.78
BRF1Q92994 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC19.92■□□□□ 0.78
BRF1Q92994 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
BRF1Q92994 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
BRF1Q92994 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
BRF1Q92994 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
BRF1Q92994 TOP3BP1-201ENST00000420768 1380 ntBASIC19.92■□□□□ 0.78
BRF1Q92994 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC19.92■□□□□ 0.78
BRF1Q92994 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
BRF1Q92994 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
BRF1Q92994 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
BRF1Q92994 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
BRF1Q92994 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC19.92■□□□□ 0.78
BRF1Q92994 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 63.9 ms