Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RTL3Q8N8U3 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RTL3Q8N8U3 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RTL3Q8N8U3 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RTL3Q8N8U3 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
RTL3Q8N8U3 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
RTL3Q8N8U3 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RTL3Q8N8U3 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC17.36■□□□□ 0.37
RTL3Q8N8U3 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RTL3Q8N8U3 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RTL3Q8N8U3 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RTL3Q8N8U3 SLC22A20-204ENST00000530038 1673 ntBASIC17.36■□□□□ 0.37
RTL3Q8N8U3 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 AL645728.1-201ENST00000366221 2101 ntBASIC17.35■□□□□ 0.37
RTL3Q8N8U3 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 BEX3-201ENST00000361298 921 ntTSL 2 BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 MED15P5-201ENST00000423150 992 ntBASIC17.35■□□□□ 0.37
RTL3Q8N8U3 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 PMS2P1-201ENST00000431037 1228 ntBASIC17.35■□□□□ 0.37
RTL3Q8N8U3 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 MIR4492-201ENST00000581627 80 ntBASIC17.35■□□□□ 0.37
RTL3Q8N8U3 AC013467.2-201ENST00000605472 835 ntBASIC17.35■□□□□ 0.37
RTL3Q8N8U3 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 FAM197Y3-203ENST00000618346 717 ntBASIC17.35■□□□□ 0.37
RTL3Q8N8U3 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 HARS-204ENST00000438307 1789 ntTSL 2 BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RTL3Q8N8U3 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.34■□□□□ 0.37
RTL3Q8N8U3 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
RTL3Q8N8U3 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
RTL3Q8N8U3 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
RTL3Q8N8U3 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RTL3Q8N8U3 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RTL3Q8N8U3 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
RTL3Q8N8U3 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
RTL3Q8N8U3 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
RTL3Q8N8U3 AP000347.1-202ENST00000435868 847 ntBASIC17.34■□□□□ 0.37
RTL3Q8N8U3 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RTL3Q8N8U3 RHOQP3-201ENST00000437982 621 ntBASIC17.34■□□□□ 0.37
RTL3Q8N8U3 KRT18P2-201ENST00000447938 1258 ntBASIC17.34■□□□□ 0.37
RTL3Q8N8U3 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC17.34■□□□□ 0.37
RTL3Q8N8U3 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC17.34■□□□□ 0.37
RTL3Q8N8U3 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
RTL3Q8N8U3 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC17.34■□□□□ 0.37
RTL3Q8N8U3 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RTL3Q8N8U3 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC17.34■□□□□ 0.37
RTL3Q8N8U3 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC17.34■□□□□ 0.37
RTL3Q8N8U3 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC17.34■□□□□ 0.37
RTL3Q8N8U3 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RTL3Q8N8U3 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.34■□□□□ 0.37
RTL3Q8N8U3 AC131009.4-201ENST00000624048 1740 ntBASIC17.34■□□□□ 0.37
RTL3Q8N8U3 AC006277.1-201ENST00000624348 1610 ntBASIC17.34■□□□□ 0.37
RTL3Q8N8U3 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
RTL3Q8N8U3 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
RTL3Q8N8U3 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
RTL3Q8N8U3 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.34■□□□□ 0.37
RTL3Q8N8U3 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
RTL3Q8N8U3 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
RTL3Q8N8U3 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RTL3Q8N8U3 AC106886.4-201ENST00000623557 2502 ntBASIC17.34■□□□□ 0.37
RTL3Q8N8U3 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
RTL3Q8N8U3 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.33■□□□□ 0.37
RTL3Q8N8U3 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
RTL3Q8N8U3 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
RTL3Q8N8U3 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.33■□□□□ 0.37
RTL3Q8N8U3 AL391256.1-201ENST00000443260 1855 ntBASIC17.33■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms