Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 SERBP1P1-201ENST00000396021 1160 ntBASIC10.54□□□□□ -0.72
LINC00643Q86TS7 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 AC079140.4-201ENST00000507448 529 ntBASIC10.54□□□□□ -0.72
LINC00643Q86TS7 AP002490.2-201ENST00000524791 560 ntBASIC10.54□□□□□ -0.72
LINC00643Q86TS7 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 SLC7A5P1-201ENST00000568957 537 ntBASIC10.54□□□□□ -0.72
LINC00643Q86TS7 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 AC093525.9-201ENST00000624961 1746 ntBASIC10.54□□□□□ -0.72
LINC00643Q86TS7 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 TCAF1P1-201ENST00000414990 2232 ntBASIC10.54□□□□□ -0.72
LINC00643Q86TS7 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 MECR-202ENST00000373791 2416 ntTSL 2 BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC10.54□□□□□ -0.72
LINC00643Q86TS7 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 NAA15-201ENST00000296543 6222 ntAPPRIS P2 TSL 1 (best) BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 LINC01311-201ENST00000565162 1445 ntBASIC10.53□□□□□ -0.72
LINC00643Q86TS7 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 KRT125P-201ENST00000546827 989 ntBASIC10.53□□□□□ -0.72
LINC00643Q86TS7 U85056.1-201ENST00000616429 682 ntBASIC10.53□□□□□ -0.72
LINC00643Q86TS7 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 AMT-204ENST00000427987 1646 ntTSL 5 BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 COLGALT1-201ENST00000252599 3704 ntAPPRIS P2 TSL 1 (best) BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 CHD5-201ENST00000262450 9646 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
LINC00643Q86TS7 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms