Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
UBE3BQ7Z3V4 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC21.04■□□□□ 0.96
UBE3BQ7Z3V4 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
UBE3BQ7Z3V4 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC21.04■□□□□ 0.96
UBE3BQ7Z3V4 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC21.04■□□□□ 0.96
UBE3BQ7Z3V4 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
UBE3BQ7Z3V4 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
UBE3BQ7Z3V4 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
UBE3BQ7Z3V4 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
UBE3BQ7Z3V4 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC21.03■□□□□ 0.96
UBE3BQ7Z3V4 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC21.03■□□□□ 0.96
UBE3BQ7Z3V4 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
UBE3BQ7Z3V4 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC21.03■□□□□ 0.96
UBE3BQ7Z3V4 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
UBE3BQ7Z3V4 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
UBE3BQ7Z3V4 CDK2AP2P3-201ENST00000422476 372 ntBASIC21.03■□□□□ 0.96
UBE3BQ7Z3V4 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC21.03■□□□□ 0.96
UBE3BQ7Z3V4 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC21.03■□□□□ 0.96
UBE3BQ7Z3V4 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC21.03■□□□□ 0.96
UBE3BQ7Z3V4 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC21.03■□□□□ 0.96
UBE3BQ7Z3V4 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC21.03■□□□□ 0.96
UBE3BQ7Z3V4 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC21.03■□□□□ 0.96
UBE3BQ7Z3V4 AC109322.1-201ENST00000524499 1264 ntBASIC21.03■□□□□ 0.96
UBE3BQ7Z3V4 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC21.03■□□□□ 0.96
UBE3BQ7Z3V4 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
UBE3BQ7Z3V4 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC21.03■□□□□ 0.96
UBE3BQ7Z3V4 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
UBE3BQ7Z3V4 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
UBE3BQ7Z3V4 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC21.03■□□□□ 0.96
UBE3BQ7Z3V4 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC21.03■□□□□ 0.96
UBE3BQ7Z3V4 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC21.03■□□□□ 0.96
UBE3BQ7Z3V4 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
UBE3BQ7Z3V4 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
UBE3BQ7Z3V4 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC21.03■□□□□ 0.96
UBE3BQ7Z3V4 TUBB8P12-201ENST00000308911 1335 ntBASIC21.03■□□□□ 0.96
UBE3BQ7Z3V4 TUBB7P-202ENST00000428444 1305 ntBASIC21.03■□□□□ 0.96
UBE3BQ7Z3V4 TUBB8P7-204ENST00000567960 1332 ntBASIC21.03■□□□□ 0.96
UBE3BQ7Z3V4 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
UBE3BQ7Z3V4 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
UBE3BQ7Z3V4 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
UBE3BQ7Z3V4 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
UBE3BQ7Z3V4 PCDHB17P-201ENST00000539533 2393 ntBASIC21.02■□□□□ 0.96
UBE3BQ7Z3V4 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
UBE3BQ7Z3V4 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC21.02■□□□□ 0.96
UBE3BQ7Z3V4 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC21.02■□□□□ 0.96
UBE3BQ7Z3V4 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
UBE3BQ7Z3V4 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC21.02■□□□□ 0.96
UBE3BQ7Z3V4 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
UBE3BQ7Z3V4 AL645939.2-201ENST00000427340 991 ntBASIC21.02■□□□□ 0.96
UBE3BQ7Z3V4 AC005237.2-201ENST00000434368 219 ntBASIC21.02■□□□□ 0.96
UBE3BQ7Z3V4 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC21.02■□□□□ 0.96
UBE3BQ7Z3V4 CYMP-203ENST00000474680 1263 ntBASIC21.02■□□□□ 0.96
UBE3BQ7Z3V4 AC069335.1-201ENST00000489972 472 ntBASIC21.02■□□□□ 0.96
UBE3BQ7Z3V4 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC21.02■□□□□ 0.96
UBE3BQ7Z3V4 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC21.02■□□□□ 0.96
UBE3BQ7Z3V4 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
UBE3BQ7Z3V4 AC106028.4-201ENST00000614509 607 ntBASIC21.02■□□□□ 0.96
UBE3BQ7Z3V4 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
UBE3BQ7Z3V4 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC21.02■□□□□ 0.96
UBE3BQ7Z3V4 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.96
UBE3BQ7Z3V4 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
UBE3BQ7Z3V4 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
UBE3BQ7Z3V4 SLC9A3P2-201ENST00000447821 2021 ntBASIC21.02■□□□□ 0.96
UBE3BQ7Z3V4 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
UBE3BQ7Z3V4 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.95
UBE3BQ7Z3V4 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC21.02■□□□□ 0.95
UBE3BQ7Z3V4 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
UBE3BQ7Z3V4 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
UBE3BQ7Z3V4 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC21.01■□□□□ 0.95
UBE3BQ7Z3V4 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC21.01■□□□□ 0.95
UBE3BQ7Z3V4 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
UBE3BQ7Z3V4 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
UBE3BQ7Z3V4 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
UBE3BQ7Z3V4 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
UBE3BQ7Z3V4 AC060834.1-201ENST00000443027 2032 ntBASIC21.01■□□□□ 0.95
UBE3BQ7Z3V4 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
UBE3BQ7Z3V4 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
UBE3BQ7Z3V4 PMS2P4-201ENST00000412466 1052 ntBASIC21.01■□□□□ 0.95
UBE3BQ7Z3V4 SPCS2P4-201ENST00000436160 681 ntBASIC21.01■□□□□ 0.95
UBE3BQ7Z3V4 HLA-J-203ENST00000494367 1087 ntBASIC21.01■□□□□ 0.95
UBE3BQ7Z3V4 DAD1-205ENST00000543337 501 ntTSL 3 BASIC21.01■□□□□ 0.95
UBE3BQ7Z3V4 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC21.01■□□□□ 0.95
UBE3BQ7Z3V4 MIR3909-201ENST00000579518 119 ntBASIC21.01■□□□□ 0.95
UBE3BQ7Z3V4 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
UBE3BQ7Z3V4 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
UBE3BQ7Z3V4 AC009093.7-201ENST00000623853 1223 ntBASIC21.01■□□□□ 0.95
UBE3BQ7Z3V4 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
UBE3BQ7Z3V4 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
UBE3BQ7Z3V4 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
UBE3BQ7Z3V4 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
UBE3BQ7Z3V4 WASH6P-202ENST00000359512 1437 ntBASIC21.01■□□□□ 0.95
UBE3BQ7Z3V4 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
UBE3BQ7Z3V4 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
UBE3BQ7Z3V4 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC21.01■□□□□ 0.95
UBE3BQ7Z3V4 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
UBE3BQ7Z3V4 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
UBE3BQ7Z3V4 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC21■□□□□ 0.95
UBE3BQ7Z3V4 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
UBE3BQ7Z3V4 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
UBE3BQ7Z3V4 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms