Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SYNE3Q6ZMZ3 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SYNE3Q6ZMZ3 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SYNE3Q6ZMZ3 TUBB8P12-201ENST00000308911 1335 ntBASIC19.97■□□□□ 0.79
SYNE3Q6ZMZ3 TUBB7P-202ENST00000428444 1305 ntBASIC19.97■□□□□ 0.79
SYNE3Q6ZMZ3 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC19.97■□□□□ 0.79
SYNE3Q6ZMZ3 TUBB8P7-204ENST00000567960 1332 ntBASIC19.97■□□□□ 0.79
SYNE3Q6ZMZ3 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
SYNE3Q6ZMZ3 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
SYNE3Q6ZMZ3 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SYNE3Q6ZMZ3 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC19.96■□□□□ 0.79
SYNE3Q6ZMZ3 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SYNE3Q6ZMZ3 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SYNE3Q6ZMZ3 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SYNE3Q6ZMZ3 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SYNE3Q6ZMZ3 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
SYNE3Q6ZMZ3 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
SYNE3Q6ZMZ3 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
SYNE3Q6ZMZ3 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SYNE3Q6ZMZ3 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
SYNE3Q6ZMZ3 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SYNE3Q6ZMZ3 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SYNE3Q6ZMZ3 PAWRP1-201ENST00000451083 565 ntBASIC19.96■□□□□ 0.79
SYNE3Q6ZMZ3 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC19.96■□□□□ 0.79
SYNE3Q6ZMZ3 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC19.96■□□□□ 0.79
SYNE3Q6ZMZ3 AL049840.3-201ENST00000602669 611 ntBASIC19.96■□□□□ 0.79
SYNE3Q6ZMZ3 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC19.96■□□□□ 0.79
SYNE3Q6ZMZ3 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC19.96■□□□□ 0.79
SYNE3Q6ZMZ3 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC19.96■□□□□ 0.79
SYNE3Q6ZMZ3 ABBA01031661.1-201ENST00000634362 1253 ntBASIC19.96■□□□□ 0.79
SYNE3Q6ZMZ3 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SYNE3Q6ZMZ3 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SYNE3Q6ZMZ3 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC19.96■□□□□ 0.79
SYNE3Q6ZMZ3 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC19.96■□□□□ 0.79
SYNE3Q6ZMZ3 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
SYNE3Q6ZMZ3 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC19.96■□□□□ 0.79
SYNE3Q6ZMZ3 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC19.96■□□□□ 0.79
SYNE3Q6ZMZ3 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC19.96■□□□□ 0.79
SYNE3Q6ZMZ3 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.79
SYNE3Q6ZMZ3 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 AC084018.2-201ENST00000613093 2607 ntBASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 SLC4A1APP2-201ENST00000424054 1259 ntBASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 AC008667.4-201ENST00000607370 168 ntBASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 MIR7706-201ENST00000613747 67 ntBASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 AC116407.3-201ENST00000623905 1129 ntBASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SYNE3Q6ZMZ3 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SYNE3Q6ZMZ3 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SYNE3Q6ZMZ3 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SYNE3Q6ZMZ3 FOS-208ENST00000555686 1496 ntTSL 2 BASIC19.94■□□□□ 0.78
SYNE3Q6ZMZ3 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC19.94■□□□□ 0.78
SYNE3Q6ZMZ3 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SYNE3Q6ZMZ3 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SYNE3Q6ZMZ3 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SYNE3Q6ZMZ3 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SYNE3Q6ZMZ3 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC19.94■□□□□ 0.78
SYNE3Q6ZMZ3 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SYNE3Q6ZMZ3 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC19.94■□□□□ 0.78
SYNE3Q6ZMZ3 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC19.94■□□□□ 0.78
SYNE3Q6ZMZ3 LITAF-211ENST00000572255 516 ntTSL 4 BASIC19.94■□□□□ 0.78
SYNE3Q6ZMZ3 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
SYNE3Q6ZMZ3 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC19.94■□□□□ 0.78
SYNE3Q6ZMZ3 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SYNE3Q6ZMZ3 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SYNE3Q6ZMZ3 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
SYNE3Q6ZMZ3 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SYNE3Q6ZMZ3 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
SYNE3Q6ZMZ3 HLA-A-201ENST00000376802 1334 ntBASIC19.94■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms