Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC88AQ3V6T2 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC88AQ3V6T2 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC88AQ3V6T2 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC88AQ3V6T2 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC88AQ3V6T2 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
CCDC88AQ3V6T2 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC20.46■□□□□ 0.87
CCDC88AQ3V6T2 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
CCDC88AQ3V6T2 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC88AQ3V6T2 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC20.46■□□□□ 0.87
CCDC88AQ3V6T2 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
CCDC88AQ3V6T2 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC88AQ3V6T2 MPV17-208ENST00000405076 603 ntTSL 5 BASIC20.46■□□□□ 0.87
CCDC88AQ3V6T2 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC88AQ3V6T2 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
CCDC88AQ3V6T2 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC88AQ3V6T2 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC20.46■□□□□ 0.87
CCDC88AQ3V6T2 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC20.46■□□□□ 0.87
CCDC88AQ3V6T2 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC88AQ3V6T2 AC092552.1-201ENST00000547243 906 ntBASIC20.46■□□□□ 0.87
CCDC88AQ3V6T2 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC20.46■□□□□ 0.87
CCDC88AQ3V6T2 MIR4525-201ENST00000580000 75 ntBASIC20.46■□□□□ 0.87
CCDC88AQ3V6T2 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
CCDC88AQ3V6T2 AC073389.1-201ENST00000595595 795 ntBASIC20.46■□□□□ 0.87
CCDC88AQ3V6T2 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC88AQ3V6T2 AC131009.4-201ENST00000624048 1740 ntBASIC20.46■□□□□ 0.87
CCDC88AQ3V6T2 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC88AQ3V6T2 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC88AQ3V6T2 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC88AQ3V6T2 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC88AQ3V6T2 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC20.46■□□□□ 0.87
CCDC88AQ3V6T2 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC20.45■□□□□ 0.87
CCDC88AQ3V6T2 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
CCDC88AQ3V6T2 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC20.45■□□□□ 0.86
CCDC88AQ3V6T2 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC20.45■□□□□ 0.86
CCDC88AQ3V6T2 AC008735.3-201ENST00000596646 500 ntBASIC20.45■□□□□ 0.86
CCDC88AQ3V6T2 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC88AQ3V6T2 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
CCDC88AQ3V6T2 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC88AQ3V6T2 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC88AQ3V6T2 HARS-204ENST00000438307 1789 ntTSL 2 BASIC20.45■□□□□ 0.86
CCDC88AQ3V6T2 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
CCDC88AQ3V6T2 CD276-203ENST00000537340 2439 ntTSL 2 BASIC20.45■□□□□ 0.86
CCDC88AQ3V6T2 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC20.45■□□□□ 0.86
CCDC88AQ3V6T2 STX3-203ENST00000529177 1571 ntTSL 2 BASIC20.45■□□□□ 0.86
CCDC88AQ3V6T2 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC20.45■□□□□ 0.86
CCDC88AQ3V6T2 FRMD8P1-201ENST00000440433 1524 ntBASIC20.45■□□□□ 0.86
CCDC88AQ3V6T2 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
CCDC88AQ3V6T2 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC20.45■□□□□ 0.86
CCDC88AQ3V6T2 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC88AQ3V6T2 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
CCDC88AQ3V6T2 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC88AQ3V6T2 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC88AQ3V6T2 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC88AQ3V6T2 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
CCDC88AQ3V6T2 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC20.45■□□□□ 0.86
CCDC88AQ3V6T2 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
CCDC88AQ3V6T2 AL162274.1-201ENST00000617191 1098 ntBASIC20.45■□□□□ 0.86
CCDC88AQ3V6T2 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC20.44■□□□□ 0.86
CCDC88AQ3V6T2 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC20.44■□□□□ 0.86
CCDC88AQ3V6T2 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC88AQ3V6T2 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC88AQ3V6T2 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC20.44■□□□□ 0.86
CCDC88AQ3V6T2 AC098614.1-201ENST00000368528 745 ntBASIC20.44■□□□□ 0.86
CCDC88AQ3V6T2 PRYP6-201ENST00000514804 343 ntBASIC20.44■□□□□ 0.86
CCDC88AQ3V6T2 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC20.44■□□□□ 0.86
CCDC88AQ3V6T2 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC20.44■□□□□ 0.86
CCDC88AQ3V6T2 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC88AQ3V6T2 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC20.44■□□□□ 0.86
CCDC88AQ3V6T2 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC88AQ3V6T2 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC88AQ3V6T2 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC20.44■□□□□ 0.86
CCDC88AQ3V6T2 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC88AQ3V6T2 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC88AQ3V6T2 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC88AQ3V6T2 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC88AQ3V6T2 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC20.44■□□□□ 0.86
CCDC88AQ3V6T2 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
CCDC88AQ3V6T2 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC20.43■□□□□ 0.86
CCDC88AQ3V6T2 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC88AQ3V6T2 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC88AQ3V6T2 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC20.43■□□□□ 0.86
CCDC88AQ3V6T2 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC20.43■□□□□ 0.86
CCDC88AQ3V6T2 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC20.43■□□□□ 0.86
CCDC88AQ3V6T2 SPDYE18-201ENST00000510091 1050 ntBASIC20.43■□□□□ 0.86
CCDC88AQ3V6T2 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC20.43■□□□□ 0.86
CCDC88AQ3V6T2 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
CCDC88AQ3V6T2 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC20.43■□□□□ 0.86
CCDC88AQ3V6T2 AP005482.1-201ENST00000563722 1273 ntBASIC20.43■□□□□ 0.86
CCDC88AQ3V6T2 MIR4259-201ENST00000584466 101 ntBASIC20.43■□□□□ 0.86
CCDC88AQ3V6T2 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
CCDC88AQ3V6T2 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC88AQ3V6T2 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC88AQ3V6T2 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC20.43■□□□□ 0.86
CCDC88AQ3V6T2 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC88AQ3V6T2 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC88AQ3V6T2 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC20.43■□□□□ 0.86
CCDC88AQ3V6T2 AC087499.5-201ENST00000452760 1342 ntBASIC20.43■□□□□ 0.86
CCDC88AQ3V6T2 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC88AQ3V6T2 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 63.9 ms