Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
PCDH1Q08174 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PCDH1Q08174 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.36■□□□□ 0.21
PCDH1Q08174 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
PCDH1Q08174 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.35■□□□□ 0.21
PCDH1Q08174 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
PCDH1Q08174 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.35■□□□□ 0.21
PCDH1Q08174 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC16.35■□□□□ 0.21
PCDH1Q08174 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.35■□□□□ 0.21
PCDH1Q08174 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH1Q08174 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
PCDH1Q08174 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH1Q08174 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH1Q08174 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH1Q08174 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH1Q08174 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH1Q08174 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
PCDH1Q08174 AC006277.1-201ENST00000624348 1610 ntBASIC16.35■□□□□ 0.21
PCDH1Q08174 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.35■□□□□ 0.21
PCDH1Q08174 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.35■□□□□ 0.21
PCDH1Q08174 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH1Q08174 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH1Q08174 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC16.35■□□□□ 0.21
PCDH1Q08174 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC16.35■□□□□ 0.21
PCDH1Q08174 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC16.35■□□□□ 0.21
PCDH1Q08174 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH1Q08174 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH1Q08174 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC16.35■□□□□ 0.21
PCDH1Q08174 AC087163.2-201ENST00000457299 853 ntBASIC16.35■□□□□ 0.21
PCDH1Q08174 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC16.35■□□□□ 0.21
PCDH1Q08174 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC16.35■□□□□ 0.21
PCDH1Q08174 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
PCDH1Q08174 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC16.35■□□□□ 0.21
PCDH1Q08174 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.35■□□□□ 0.21
PCDH1Q08174 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC16.35■□□□□ 0.21
PCDH1Q08174 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
PCDH1Q08174 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.35■□□□□ 0.21
PCDH1Q08174 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.35■□□□□ 0.21
PCDH1Q08174 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.35■□□□□ 0.21
PCDH1Q08174 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH1Q08174 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH1Q08174 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH1Q08174 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
PCDH1Q08174 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH1Q08174 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH1Q08174 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH1Q08174 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
PCDH1Q08174 AC002310.6-201ENST00000624451 1377 ntBASIC16.35■□□□□ 0.21
PCDH1Q08174 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH1Q08174 AL391256.1-201ENST00000443260 1855 ntBASIC16.35■□□□□ 0.21
PCDH1Q08174 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH1Q08174 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH1Q08174 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH1Q08174 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH1Q08174 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH1Q08174 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH1Q08174 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.35■□□□□ 0.21
PCDH1Q08174 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
PCDH1Q08174 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PCDH1Q08174 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
PCDH1Q08174 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
PCDH1Q08174 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PCDH1Q08174 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PCDH1Q08174 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.34■□□□□ 0.21
PCDH1Q08174 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.34■□□□□ 0.21
PCDH1Q08174 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
PCDH1Q08174 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PCDH1Q08174 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PCDH1Q08174 ELK2BP-201ENST00000415014 1224 ntBASIC16.34■□□□□ 0.21
PCDH1Q08174 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC16.34■□□□□ 0.21
PCDH1Q08174 EMBP1-201ENST00000458200 901 ntBASIC16.34■□□□□ 0.21
PCDH1Q08174 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC16.34■□□□□ 0.21
PCDH1Q08174 RNPS1P1-201ENST00000507437 918 ntBASIC16.34■□□□□ 0.21
PCDH1Q08174 OR7E14P-202ENST00000530490 1290 ntBASIC16.34■□□□□ 0.21
PCDH1Q08174 KRT126P-201ENST00000549467 1181 ntBASIC16.34■□□□□ 0.21
PCDH1Q08174 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.34■□□□□ 0.21
PCDH1Q08174 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC16.34■□□□□ 0.21
PCDH1Q08174 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC16.34■□□□□ 0.21
PCDH1Q08174 MIR4492-201ENST00000581627 80 ntBASIC16.34■□□□□ 0.21
PCDH1Q08174 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC16.34■□□□□ 0.21
PCDH1Q08174 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PCDH1Q08174 GGTLC5P-201ENST00000617623 998 ntBASIC16.34■□□□□ 0.21
PCDH1Q08174 AC008735.5-201ENST00000623544 497 ntBASIC16.34■□□□□ 0.21
PCDH1Q08174 TP73-AS1-207ENST00000624167 988 ntBASIC16.34■□□□□ 0.21
PCDH1Q08174 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.34■□□□□ 0.21
PCDH1Q08174 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.34■□□□□ 0.21
PCDH1Q08174 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.34■□□□□ 0.21
PCDH1Q08174 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
PCDH1Q08174 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
PCDH1Q08174 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PCDH1Q08174 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC16.34■□□□□ 0.21
PCDH1Q08174 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.34■□□□□ 0.21
PCDH1Q08174 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PCDH1Q08174 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.34■□□□□ 0.21
PCDH1Q08174 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC16.34■□□□□ 0.21
PCDH1Q08174 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PCDH1Q08174 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PCDH1Q08174 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
PCDH1Q08174 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.33■□□□□ 0.21
PCDH1Q08174 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.33■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms