Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC12.02□□□□□ -0.49
PRKDCP78527 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
PRKDCP78527 HNRNPA1P48-201ENST00000562726 1377 ntBASIC12.02□□□□□ -0.49
PRKDCP78527 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
PRKDCP78527 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
PRKDCP78527 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC12.02□□□□□ -0.49
PRKDCP78527 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC12.02□□□□□ -0.49
PRKDCP78527 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC12.02□□□□□ -0.49
PRKDCP78527 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC12.02□□□□□ -0.49
PRKDCP78527 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC12.02□□□□□ -0.49
PRKDCP78527 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC12.02□□□□□ -0.49
PRKDCP78527 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC12.02□□□□□ -0.49
PRKDCP78527 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
PRKDCP78527 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC12.02□□□□□ -0.49
PRKDCP78527 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
PRKDCP78527 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
PRKDCP78527 KRT8P12-202ENST00000472924 1397 ntBASIC12.01□□□□□ -0.49
PRKDCP78527 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
PRKDCP78527 UPF3AP2-201ENST00000457924 1132 ntBASIC12.01□□□□□ -0.49
PRKDCP78527 SDHAP3-202ENST00000515467 728 ntBASIC12.01□□□□□ -0.49
PRKDCP78527 ADM-202ENST00000524948 584 ntTSL 2 BASIC12.01□□□□□ -0.49
PRKDCP78527 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC12.01□□□□□ -0.49
PRKDCP78527 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
PRKDCP78527 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
PRKDCP78527 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
PRKDCP78527 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
PRKDCP78527 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC12.01□□□□□ -0.49
PRKDCP78527 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
PRKDCP78527 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
PRKDCP78527 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
PRKDCP78527 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
PRKDCP78527 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC12.01□□□□□ -0.49
PRKDCP78527 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
PRKDCP78527 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
PRKDCP78527 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
PRKDCP78527 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
PRKDCP78527 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
PRKDCP78527 AL662890.1-201ENST00000396818 632 ntBASIC12.01□□□□□ -0.49
PRKDCP78527 PFN1P12-201ENST00000455938 534 ntBASIC12.01□□□□□ -0.49
PRKDCP78527 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC12.01□□□□□ -0.49
PRKDCP78527 RN7SL828P-201ENST00000607615 303 ntBASIC12.01□□□□□ -0.49
PRKDCP78527 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
PRKDCP78527 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC12.01□□□□□ -0.49
PRKDCP78527 AC026954.1-201ENST00000429771 1293 ntBASIC12.01□□□□□ -0.49
PRKDCP78527 AC104784.1-201ENST00000473096 294 ntBASIC12.01□□□□□ -0.49
PRKDCP78527 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC12.01□□□□□ -0.49
PRKDCP78527 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC12.01□□□□□ -0.49
PRKDCP78527 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC12.01□□□□□ -0.49
PRKDCP78527 MIR6756-201ENST00000616240 63 ntBASIC12.01□□□□□ -0.49
PRKDCP78527 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
PRKDCP78527 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
PRKDCP78527 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
PRKDCP78527 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
PRKDCP78527 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC12.01□□□□□ -0.49
PRKDCP78527 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC12.01□□□□□ -0.49
PRKDCP78527 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC12.01□□□□□ -0.49
PRKDCP78527 EGFEM1P-202ENST00000431685 1563 ntBASIC12.01□□□□□ -0.49
PRKDCP78527 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
PRKDCP78527 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC12.01□□□□□ -0.49
PRKDCP78527 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
PRKDCP78527 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
PRKDCP78527 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
PRKDCP78527 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC12.01□□□□□ -0.49
PRKDCP78527 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC12.01□□□□□ -0.49
PRKDCP78527 AC114501.1-201ENST00000445949 172 ntBASIC12.01□□□□□ -0.49
PRKDCP78527 EIF4HP1-201ENST00000453115 687 ntBASIC12.01□□□□□ -0.49
PRKDCP78527 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC12.01□□□□□ -0.49
PRKDCP78527 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC12.01□□□□□ -0.49
PRKDCP78527 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC12.01□□□□□ -0.49
PRKDCP78527 AC097724.1-201ENST00000609581 426 ntBASIC12.01□□□□□ -0.49
PRKDCP78527 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC12□□□□□ -0.49
PRKDCP78527 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC12□□□□□ -0.49
PRKDCP78527 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
PRKDCP78527 RPS3-201ENST00000278572 907 ntTSL 3 BASIC12□□□□□ -0.49
PRKDCP78527 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
PRKDCP78527 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC12□□□□□ -0.49
PRKDCP78527 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC12□□□□□ -0.49
PRKDCP78527 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC12□□□□□ -0.49
PRKDCP78527 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
PRKDCP78527 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC12□□□□□ -0.49
PRKDCP78527 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
PRKDCP78527 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC12□□□□□ -0.49
PRKDCP78527 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC12□□□□□ -0.49
PRKDCP78527 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC12□□□□□ -0.49
PRKDCP78527 GOLGA2P9-201ENST00000596977 1937 ntBASIC12□□□□□ -0.49
PRKDCP78527 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
PRKDCP78527 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC12□□□□□ -0.49
PRKDCP78527 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC12□□□□□ -0.49
PRKDCP78527 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
PRKDCP78527 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC12□□□□□ -0.49
PRKDCP78527 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC12□□□□□ -0.49
PRKDCP78527 PFN2-215ENST00000497148 743 ntTSL 4 BASIC12□□□□□ -0.49
PRKDCP78527 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC12□□□□□ -0.49
PRKDCP78527 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC12□□□□□ -0.49
PRKDCP78527 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC12□□□□□ -0.49
PRKDCP78527 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC12□□□□□ -0.49
PRKDCP78527 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
PRKDCP78527 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC12□□□□□ -0.49
PRKDCP78527 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
PRKDCP78527 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms