Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIMK1P53667 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIMK1P53667 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIMK1P53667 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LIMK1P53667 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC16.7■□□□□ 0.26
LIMK1P53667 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIMK1P53667 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC16.7■□□□□ 0.26
LIMK1P53667 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIMK1P53667 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC16.7■□□□□ 0.26
LIMK1P53667 SLC25A6P2-201ENST00000497974 877 ntBASIC16.7■□□□□ 0.26
LIMK1P53667 IFT20-216ENST00000588477 774 ntTSL 5 BASIC16.7■□□□□ 0.26
LIMK1P53667 AL606495.2-201ENST00000605867 535 ntBASIC16.7■□□□□ 0.26
LIMK1P53667 COQ4-205ENST00000609948 956 ntTSL 2 BASIC16.7■□□□□ 0.26
LIMK1P53667 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC16.7■□□□□ 0.26
LIMK1P53667 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIMK1P53667 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC16.7■□□□□ 0.26
LIMK1P53667 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC16.7■□□□□ 0.26
LIMK1P53667 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIMK1P53667 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LIMK1P53667 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LIMK1P53667 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LIMK1P53667 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC16.7■□□□□ 0.26
LIMK1P53667 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC16.7■□□□□ 0.26
LIMK1P53667 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIMK1P53667 PP12613-201ENST00000424958 2230 ntBASIC16.69■□□□□ 0.26
LIMK1P53667 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.69■□□□□ 0.26
LIMK1P53667 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
LIMK1P53667 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC16.69■□□□□ 0.26
LIMK1P53667 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
LIMK1P53667 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC16.69■□□□□ 0.26
LIMK1P53667 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LIMK1P53667 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC16.69■□□□□ 0.26
LIMK1P53667 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC16.69■□□□□ 0.26
LIMK1P53667 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC16.69■□□□□ 0.26
LIMK1P53667 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC16.69■□□□□ 0.26
LIMK1P53667 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC16.69■□□□□ 0.26
LIMK1P53667 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.69■□□□□ 0.26
LIMK1P53667 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LIMK1P53667 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC16.69■□□□□ 0.26
LIMK1P53667 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIMK1P53667 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIMK1P53667 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIMK1P53667 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LIMK1P53667 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LIMK1P53667 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC16.69■□□□□ 0.26
LIMK1P53667 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIMK1P53667 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LIMK1P53667 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.69■□□□□ 0.26
LIMK1P53667 FLYWCH1P1-201ENST00000460917 1874 ntBASIC16.69■□□□□ 0.26
LIMK1P53667 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIMK1P53667 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIMK1P53667 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIMK1P53667 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIMK1P53667 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
LIMK1P53667 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LIMK1P53667 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC16.68■□□□□ 0.26
LIMK1P53667 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC16.68■□□□□ 0.26
LIMK1P53667 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.68■□□□□ 0.26
LIMK1P53667 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIMK1P53667 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LIMK1P53667 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIMK1P53667 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIMK1P53667 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIMK1P53667 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
LIMK1P53667 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
LIMK1P53667 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIMK1P53667 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LIMK1P53667 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC16.68■□□□□ 0.26
LIMK1P53667 AC087163.2-201ENST00000457299 853 ntBASIC16.68■□□□□ 0.26
LIMK1P53667 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC16.68■□□□□ 0.26
LIMK1P53667 MIR4515-201ENST00000584082 81 ntBASIC16.68■□□□□ 0.26
LIMK1P53667 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIMK1P53667 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC16.68■□□□□ 0.26
LIMK1P53667 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.68■□□□□ 0.26
LIMK1P53667 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LIMK1P53667 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIMK1P53667 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIMK1P53667 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIMK1P53667 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIMK1P53667 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIMK1P53667 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIMK1P53667 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
LIMK1P53667 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.68■□□□□ 0.26
LIMK1P53667 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC16.68■□□□□ 0.26
LIMK1P53667 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIMK1P53667 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
LIMK1P53667 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIMK1P53667 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIMK1P53667 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
LIMK1P53667 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIMK1P53667 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC16.67■□□□□ 0.26
LIMK1P53667 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC16.67■□□□□ 0.26
LIMK1P53667 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIMK1P53667 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LIMK1P53667 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LIMK1P53667 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LIMK1P53667 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.67■□□□□ 0.26
LIMK1P53667 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIMK1P53667 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIMK1P53667 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms