Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A4P53420 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC17.89■□□□□ 0.45
COL4A4P53420 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC17.89■□□□□ 0.45
COL4A4P53420 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC17.89■□□□□ 0.45
COL4A4P53420 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
COL4A4P53420 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC17.89■□□□□ 0.45
COL4A4P53420 AC007431.3-201ENST00000623221 587 ntBASIC17.89■□□□□ 0.45
COL4A4P53420 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A4P53420 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.89■□□□□ 0.45
COL4A4P53420 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A4P53420 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A4P53420 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A4P53420 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A4P53420 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
COL4A4P53420 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A4P53420 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
COL4A4P53420 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.88■□□□□ 0.45
COL4A4P53420 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A4P53420 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A4P53420 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17.88■□□□□ 0.45
COL4A4P53420 TMEM14DP-201ENST00000422205 345 ntBASIC17.88■□□□□ 0.45
COL4A4P53420 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC17.88■□□□□ 0.45
COL4A4P53420 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A4P53420 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A4P53420 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC17.88■□□□□ 0.45
COL4A4P53420 AL033527.4-201ENST00000641026 673 ntBASIC17.88■□□□□ 0.45
COL4A4P53420 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A4P53420 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A4P53420 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A4P53420 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
COL4A4P53420 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.88■□□□□ 0.45
COL4A4P53420 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
COL4A4P53420 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC17.88■□□□□ 0.45
COL4A4P53420 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A4P53420 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A4P53420 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A4P53420 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC17.88■□□□□ 0.45
COL4A4P53420 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A4P53420 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC17.88■□□□□ 0.45
COL4A4P53420 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A4P53420 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
COL4A4P53420 MIR346-201ENST00000362234 95 ntBASIC17.87■□□□□ 0.45
COL4A4P53420 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
COL4A4P53420 DGCR5-201ENST00000399539 862 ntBASIC17.87■□□□□ 0.45
COL4A4P53420 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A4P53420 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A4P53420 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC17.87■□□□□ 0.45
COL4A4P53420 INE1-201ENST00000456273 945 ntBASIC17.87■□□□□ 0.45
COL4A4P53420 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC17.87■□□□□ 0.45
COL4A4P53420 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC17.87■□□□□ 0.45
COL4A4P53420 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC17.87■□□□□ 0.45
COL4A4P53420 MIR6805-201ENST00000615055 62 ntBASIC17.87■□□□□ 0.45
COL4A4P53420 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
COL4A4P53420 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A4P53420 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
COL4A4P53420 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A4P53420 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.87■□□□□ 0.45
COL4A4P53420 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A4P53420 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A4P53420 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A4P53420 AP3S2-216ENST00000617003 1561 ntBASIC17.87■□□□□ 0.45
COL4A4P53420 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A4P53420 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A4P53420 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
COL4A4P53420 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
COL4A4P53420 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC17.87■□□□□ 0.45
COL4A4P53420 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A4P53420 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC17.87■□□□□ 0.45
COL4A4P53420 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC17.87■□□□□ 0.45
COL4A4P53420 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A4P53420 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC17.87■□□□□ 0.45
COL4A4P53420 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC17.87■□□□□ 0.45
COL4A4P53420 AC003101.2-201ENST00000612557 442 ntBASIC17.87■□□□□ 0.45
COL4A4P53420 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.87■□□□□ 0.45
COL4A4P53420 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL4A4P53420 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
COL4A4P53420 AL023806.1-201ENST00000603994 1649 ntBASIC17.86■□□□□ 0.45
COL4A4P53420 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL4A4P53420 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL4A4P53420 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC17.86■□□□□ 0.45
COL4A4P53420 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
COL4A4P53420 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
COL4A4P53420 LETM1P2-201ENST00000597330 2178 ntBASIC17.86■□□□□ 0.45
COL4A4P53420 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC17.86■□□□□ 0.45
COL4A4P53420 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.86■□□□□ 0.45
COL4A4P53420 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL4A4P53420 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL4A4P53420 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC17.86■□□□□ 0.45
COL4A4P53420 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
COL4A4P53420 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC17.86■□□□□ 0.45
COL4A4P53420 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC17.86■□□□□ 0.45
COL4A4P53420 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
COL4A4P53420 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC17.86■□□□□ 0.45
COL4A4P53420 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC17.86■□□□□ 0.45
COL4A4P53420 SNX29P1-201ENST00000548357 1007 ntBASIC17.86■□□□□ 0.45
COL4A4P53420 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC17.86■□□□□ 0.45
COL4A4P53420 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC17.86■□□□□ 0.45
COL4A4P53420 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC17.86■□□□□ 0.45
COL4A4P53420 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL4A4P53420 AC018529.1-201ENST00000613063 361 ntBASIC17.86■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms