Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC18.55■□□□□ 0.56
CLCN3P51790 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CLCN3P51790 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC18.55■□□□□ 0.56
CLCN3P51790 INO80E-210ENST00000567705 880 ntTSL 3 BASIC18.55■□□□□ 0.56
CLCN3P51790 MIR4492-201ENST00000581627 80 ntBASIC18.55■□□□□ 0.56
CLCN3P51790 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC18.55■□□□□ 0.56
CLCN3P51790 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLCN3P51790 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CLCN3P51790 AP001350.2-201ENST00000625104 1094 ntBASIC18.55■□□□□ 0.56
CLCN3P51790 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC18.55■□□□□ 0.56
CLCN3P51790 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC18.55■□□□□ 0.56
CLCN3P51790 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLCN3P51790 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLCN3P51790 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC18.55■□□□□ 0.56
CLCN3P51790 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLCN3P51790 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLCN3P51790 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CLCN3P51790 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC18.55■□□□□ 0.56
CLCN3P51790 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLCN3P51790 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLCN3P51790 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.55■□□□□ 0.56
CLCN3P51790 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLCN3P51790 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLCN3P51790 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLCN3P51790 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLCN3P51790 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLCN3P51790 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLCN3P51790 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLCN3P51790 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLCN3P51790 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLCN3P51790 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLCN3P51790 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLCN3P51790 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC18.54■□□□□ 0.56
CLCN3P51790 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
CLCN3P51790 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CLCN3P51790 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC18.54■□□□□ 0.56
CLCN3P51790 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC18.54■□□□□ 0.56
CLCN3P51790 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLCN3P51790 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CLCN3P51790 CDK2AP2P3-201ENST00000422476 372 ntBASIC18.54■□□□□ 0.56
CLCN3P51790 SPCS2P4-201ENST00000436160 681 ntBASIC18.54■□□□□ 0.56
CLCN3P51790 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CLCN3P51790 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC18.54■□□□□ 0.56
CLCN3P51790 AC069335.1-201ENST00000489972 472 ntBASIC18.54■□□□□ 0.56
CLCN3P51790 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC18.54■□□□□ 0.56
CLCN3P51790 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC18.54■□□□□ 0.56
CLCN3P51790 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC18.54■□□□□ 0.56
CLCN3P51790 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CLCN3P51790 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC18.54■□□□□ 0.56
CLCN3P51790 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CLCN3P51790 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC18.54■□□□□ 0.56
CLCN3P51790 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLCN3P51790 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CLCN3P51790 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.54■□□□□ 0.56
CLCN3P51790 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLCN3P51790 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC18.54■□□□□ 0.56
CLCN3P51790 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLCN3P51790 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC18.54■□□□□ 0.56
CLCN3P51790 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLCN3P51790 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLCN3P51790 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CLCN3P51790 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CLCN3P51790 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLCN3P51790 AC005332.8-201ENST00000622750 2735 ntBASIC18.53■□□□□ 0.56
CLCN3P51790 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLCN3P51790 AL023806.1-201ENST00000603994 1649 ntBASIC18.53■□□□□ 0.56
CLCN3P51790 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CLCN3P51790 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLCN3P51790 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLCN3P51790 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLCN3P51790 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLCN3P51790 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLCN3P51790 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC18.53■□□□□ 0.56
CLCN3P51790 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLCN3P51790 HLA-J-203ENST00000494367 1087 ntBASIC18.53■□□□□ 0.56
CLCN3P51790 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLCN3P51790 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC18.53■□□□□ 0.56
CLCN3P51790 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CLCN3P51790 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC18.53■□□□□ 0.56
CLCN3P51790 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
CLCN3P51790 AC009093.7-201ENST00000623853 1223 ntBASIC18.53■□□□□ 0.56
CLCN3P51790 LINC00628-201ENST00000628516 1289 ntBASIC18.53■□□□□ 0.56
CLCN3P51790 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC18.53■□□□□ 0.56
CLCN3P51790 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLCN3P51790 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLCN3P51790 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC18.53■□□□□ 0.56
CLCN3P51790 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLCN3P51790 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLCN3P51790 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLCN3P51790 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CLCN3P51790 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLCN3P51790 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLCN3P51790 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLCN3P51790 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CLCN3P51790 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CLCN3P51790 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC18.52■□□□□ 0.56
CLCN3P51790 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
CLCN3P51790 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CLCN3P51790 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CLCN3P51790 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms