Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
USF1P22415 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
USF1P22415 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
USF1P22415 AC009053.2-201ENST00000563701 2365 ntBASIC14.39□□□□□ -0.11
USF1P22415 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
USF1P22415 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC14.39□□□□□ -0.11
USF1P22415 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
USF1P22415 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC14.39□□□□□ -0.11
USF1P22415 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
USF1P22415 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC14.39□□□□□ -0.11
USF1P22415 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
USF1P22415 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
USF1P22415 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC14.39□□□□□ -0.11
USF1P22415 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
USF1P22415 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
USF1P22415 NABP1-203ENST00000409510 843 ntTSL 5 BASIC14.39□□□□□ -0.11
USF1P22415 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
USF1P22415 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
USF1P22415 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
USF1P22415 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC14.39□□□□□ -0.11
USF1P22415 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
USF1P22415 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
USF1P22415 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC14.39□□□□□ -0.11
USF1P22415 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
USF1P22415 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC14.39□□□□□ -0.11
USF1P22415 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
USF1P22415 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
USF1P22415 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC14.39□□□□□ -0.11
USF1P22415 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
USF1P22415 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
USF1P22415 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
USF1P22415 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
USF1P22415 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
USF1P22415 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC14.39□□□□□ -0.11
USF1P22415 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
USF1P22415 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
USF1P22415 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC14.39□□□□□ -0.11
USF1P22415 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
USF1P22415 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
USF1P22415 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
USF1P22415 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
USF1P22415 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
USF1P22415 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
USF1P22415 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
USF1P22415 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
USF1P22415 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
USF1P22415 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
USF1P22415 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC14.38□□□□□ -0.11
USF1P22415 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC14.38□□□□□ -0.11
USF1P22415 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
USF1P22415 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
USF1P22415 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
USF1P22415 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC14.38□□□□□ -0.11
USF1P22415 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
USF1P22415 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC14.38□□□□□ -0.11
USF1P22415 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
USF1P22415 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC14.38□□□□□ -0.11
USF1P22415 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC14.38□□□□□ -0.11
USF1P22415 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC14.38□□□□□ -0.11
USF1P22415 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC14.38□□□□□ -0.11
USF1P22415 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC14.38□□□□□ -0.11
USF1P22415 AC106028.4-201ENST00000614509 607 ntBASIC14.38□□□□□ -0.11
USF1P22415 AC091812.2-201ENST00000619081 385 ntBASIC14.38□□□□□ -0.11
USF1P22415 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
USF1P22415 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
USF1P22415 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
USF1P22415 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
USF1P22415 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC14.38□□□□□ -0.11
USF1P22415 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
USF1P22415 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
USF1P22415 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
USF1P22415 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC14.38□□□□□ -0.11
USF1P22415 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
USF1P22415 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
USF1P22415 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
USF1P22415 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
USF1P22415 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
USF1P22415 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
USF1P22415 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
USF1P22415 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
USF1P22415 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.11
USF1P22415 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
USF1P22415 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC14.37□□□□□ -0.11
USF1P22415 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
USF1P22415 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
USF1P22415 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
USF1P22415 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
USF1P22415 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC14.37□□□□□ -0.11
USF1P22415 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
USF1P22415 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC14.37□□□□□ -0.11
USF1P22415 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
USF1P22415 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
USF1P22415 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
USF1P22415 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
USF1P22415 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
USF1P22415 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC14.37□□□□□ -0.11
USF1P22415 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC14.37□□□□□ -0.11
USF1P22415 MIR3197-201ENST00000582241 73 ntBASIC14.37□□□□□ -0.11
USF1P22415 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC14.37□□□□□ -0.11
USF1P22415 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms