Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 UBC-206ENST00000538617 1303 ntTSL 5 BASIC18.74■□□□□ 0.59
TPM1P09493 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TPM1P09493 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC18.73■□□□□ 0.59
TPM1P09493 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC18.73■□□□□ 0.59
TPM1P09493 AL135999.2-201ENST00000622438 1686 ntBASIC18.73■□□□□ 0.59
TPM1P09493 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TPM1P09493 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TPM1P09493 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC18.73■□□□□ 0.59
TPM1P09493 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TPM1P09493 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TPM1P09493 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TPM1P09493 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TPM1P09493 AC087499.1-201ENST00000418141 1075 ntBASIC18.73■□□□□ 0.59
TPM1P09493 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC18.73■□□□□ 0.59
TPM1P09493 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TPM1P09493 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC18.73■□□□□ 0.59
TPM1P09493 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC18.73■□□□□ 0.59
TPM1P09493 AC068418.2-201ENST00000577309 3703 ntBASIC18.73■□□□□ 0.59
TPM1P09493 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
TPM1P09493 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TPM1P09493 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
TPM1P09493 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TPM1P09493 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TPM1P09493 FRMD8P1-201ENST00000440433 1524 ntBASIC18.73■□□□□ 0.59
TPM1P09493 FUT8-AS1-201ENST00000621019 1521 ntBASIC18.73■□□□□ 0.59
TPM1P09493 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TPM1P09493 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TPM1P09493 KRT8P10-201ENST00000450021 1447 ntBASIC18.73■□□□□ 0.59
TPM1P09493 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC18.73■□□□□ 0.59
TPM1P09493 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TPM1P09493 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TPM1P09493 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
TPM1P09493 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
TPM1P09493 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
TPM1P09493 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
TPM1P09493 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC18.72■□□□□ 0.59
TPM1P09493 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TPM1P09493 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TPM1P09493 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
TPM1P09493 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
TPM1P09493 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
TPM1P09493 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
TPM1P09493 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TPM1P09493 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TPM1P09493 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC18.72■□□□□ 0.59
TPM1P09493 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
TPM1P09493 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
TPM1P09493 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC18.72■□□□□ 0.59
TPM1P09493 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
TPM1P09493 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
TPM1P09493 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
TPM1P09493 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
TPM1P09493 AC112907.2-201ENST00000448639 330 ntBASIC18.72■□□□□ 0.59
TPM1P09493 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
TPM1P09493 VENTXP5-201ENST00000523979 775 ntBASIC18.72■□□□□ 0.59
TPM1P09493 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC18.72■□□□□ 0.59
TPM1P09493 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC18.72■□□□□ 0.59
TPM1P09493 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC18.72■□□□□ 0.59
TPM1P09493 BANP-201ENST00000286122 2368 ntTSL 5 BASIC18.72■□□□□ 0.59
TPM1P09493 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TPM1P09493 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC18.72■□□□□ 0.59
TPM1P09493 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
TPM1P09493 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TPM1P09493 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TPM1P09493 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TPM1P09493 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC18.72■□□□□ 0.59
TPM1P09493 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC18.72■□□□□ 0.59
TPM1P09493 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
TPM1P09493 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
TPM1P09493 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC18.72■□□□□ 0.59
TPM1P09493 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
TPM1P09493 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TPM1P09493 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
TPM1P09493 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TPM1P09493 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC18.72■□□□□ 0.59
TPM1P09493 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC18.72■□□□□ 0.59
TPM1P09493 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC18.72■□□□□ 0.59
TPM1P09493 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
TPM1P09493 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
TPM1P09493 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
TPM1P09493 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC18.71■□□□□ 0.59
TPM1P09493 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TPM1P09493 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TPM1P09493 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC18.71■□□□□ 0.59
TPM1P09493 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TPM1P09493 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TPM1P09493 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TPM1P09493 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TPM1P09493 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TPM1P09493 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TPM1P09493 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.71■□□□□ 0.59
TPM1P09493 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC18.71■□□□□ 0.59
TPM1P09493 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC18.71■□□□□ 0.59
TPM1P09493 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC18.71■□□□□ 0.59
TPM1P09493 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC18.71■□□□□ 0.59
TPM1P09493 CD320-202ENST00000537716 1119 ntTSL 2 BASIC18.71■□□□□ 0.59
TPM1P09493 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC18.71■□□□□ 0.59
TPM1P09493 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC18.71■□□□□ 0.59
TPM1P09493 RNF126P1-202ENST00000569893 925 ntBASIC18.71■□□□□ 0.59
TPM1P09493 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms